# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 8.82e-15 1m65A 245 3.19e-11 c.6.3.1 84847 2anuA 255 9.85e-09 c.6.3.1 127058 1v77A 212 9.95e-06 c.6.3.2 108402 2hnhA 910 0.000379 2ffiA 288 0.7369 c.1.9.15 133385 1j6oA 268 0.8158 c.1.9.12 77088 2qt3A 403 0.8329 1xwyA 264 1.232 c.1.9.12 122411 1muwA 386 1.560 c.1.15.3 79495 1vflA 356 1.701 c.1.9.1 120041 1fxxA 482 2.299 c.55.3.5 33726 2gzxA 265 3.506 2gokA 429 4.362 1bf6A 291 4.479 c.1.9.3 29065 3bofA 566 4.575 1q7zA 566 4.964 c.1.21.2,c.1.26.1 96090,96091 1gkpA 458 5.285 b.92.1.3,c.1.9.6 70231,70232 2b81A 323 5.543 3be7A 408 5.739 2pajA 492 6.254 2vc7A 314 6.582 1ybqB 390 6.769 1zzmA 259 8.057 c.1.9.12 125911 1yixA 265 8.784 c.1.9.12 123371 1o0yA 260 9.060 c.1.10.1 80756 1y97A 238 10.20 c.55.3.5 122773 1gkrA 458 10.30 b.92.1.3,c.1.9.6 70251,70252 2igiA 180 12.19 2i57A 438 13.68 1n7kA 234 14.22 c.1.10.1 85374 2qahA 303 14.65 2qxfA 482 14.91 1tv8A 340 15.68 c.1.28.3 107352 2g0wA 296 16.22 c.1.15.4 134503 1i0dA 332 16.47 c.1.9.3 61487 1hw6A 278 16.79 c.1.7.1 61296 2g3fA 421 20.03 1us0A 316 20.33 c.1.7.1 99850 2oa8A 233 20.63 1k77A 260 21.09 c.1.15.5 72096 2hbvA 334 21.59 c.1.9.15 136320 1ytaA 180 21.69 c.55.3.5 124002 1a0dA 440 22.48 c.1.15.3 29533 3cnyA 301 24.66 1f07A 321 25.97 c.1.16.3 59560 1yrrA 382 26.54 b.92.1.5,c.1.9.10 123935,123936 2ojpA 292 27.65 1vljA 407 28.17 e.22.1.2 108832 1a0cA 438 28.55 c.1.15.3 29529 1rrmA 386 28.78 e.22.1.2 105081 1vbuA 328 28.91 c.1.8.3 119963 3b9oA 440 29.50 2f96A 224 30.99 c.55.3.5 133153 2r8wA 332 33.33 1vbjA 281 33.44 1qtwA 285 34.84 c.1.15.1 29392 1i60A 278 35.25 c.1.15.4 71118 2pgfA 371 35.88 2puzA 419 36.90 1w8sA 263 38.33 c.1.10.1 120744 2q02A 272 40.17 1zuaX 317 40.47 1frb 315 40.55 2icsA 379 40.99 b.92.1.8,c.1.9.14 137241,137242 2gwnA 452 41.50 1rk6A 496 41.50 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2yvdA 431 41.92 1tvlA 454 42.11 c.1.16.4 107366 1s1pA 331 43.45 c.1.7.1 98350 2amxA 376 44.51 c.1.9.1 127024 1ezwA 349 45.82 c.1.16.3 29558 2pocA 367 46.61 2v8pA 271 47.47 2pg3A 232 47.82 1j96A 323 47.95 c.1.7.1 71616 2ob3A 330 48.25 1yx1A 264 48.94 c.1.15.7 124169 1oltA 457 49.17 c.1.28.2 93334 2oxnA 340 49.63 1gqnA 252 49.88 c.1.10.1 90514 1e8gA 560 50.79 d.58.32.1,d.145.1.1 39455,41718 1yw1A 442 52.55 c.1.16.4 124130 3bjsA 428 56.67 2i5gA 325 57.63 3c86A 328 58.16 1k0fA 277 59.02 c.92.2.2 71974 2qv5A 261 62.05 3ciwA 348 62.46 2vccA 891 62.73 1g5aA 628 62.80 b.71.1.1,c.1.8.1 65152,65153 2i7gA 376 63.32 1qnrA 344 64.65 c.1.8.3 28834 2f6kA 307 64.80 c.1.9.15 133047 1kkoA 413 67.52 c.1.11.2,d.54.1.1 68675,68676 1zjjA 263 69.05 1yacA 208 69.14 c.33.1.3 31757 2qs8A 418 69.85 2qw5A 335 70.10 2ehhA 294 70.60 2qulA 290 70.99 1uk8A 282 72.05 c.69.1.10 107907 1q6zA 528 72.67 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2cygA 312 72.89 c.1.8.3 131025 2v9dA 343 74.80 1nrwA 288 75.31 c.108.1.10 86128 1lucB 324 75.34 c.1.16.1 29548 1qw9A 502 76.31 b.71.1.2,c.1.8.3 96466,96467 1oyjA 231 76.52 a.45.1.1,c.47.1.5 87597,87598 1vc4A 254 79.61 c.1.2.4 100557 1vcvA 226 80.48 c.1.10.1 119988 1w8gA 234 81.93 1g5bA 221 81.97 d.159.1.3 60261 2rfgA 297 83.50 1smdA 496 83.53 b.71.1.1,c.1.8.1 27768,28755 2nlyA 245 83.83 c.6.2.7 138364 2ao0A 324 84.07 2d5rA 252 84.45 2imrA 420 84.97 1ra0A 430 87.43 b.92.1.2,c.1.9.5 111756,111757 7odcA 424 87.48 b.49.2.3,c.1.6.1 26488,28650 2cftA 298 88.79 1ny1A 240 88.84 c.6.2.3 86395 3cjpA 272 88.91 2phzA 311 89.33 2atsA 292 89.53 c.1.10.1 127306 2hk0A 309 89.61