# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.13e-16 1m65A 245 3.32e-13 c.6.3.1 84847 2anuA 255 2.24e-10 c.6.3.1 127058 1v77A 212 3.72e-07 c.6.3.2 108402 2hnhA 910 2.91e-06 2qahA 303 0.5802 1vflA 356 0.7653 c.1.9.1 120041 1j6oA 268 0.7929 c.1.9.12 77088 2ob3A 330 0.8894 2ffiA 288 1.095 c.1.9.15 133385 2gokA 429 2.922 1y97A 238 3.531 c.55.3.5 122773 2z00A 426 3.769 2igiA 180 3.888 1gkrA 458 4.257 b.92.1.3,c.1.9.6 70251,70252 2gzxA 265 4.365 2qt3A 403 4.946 2vc7A 314 5.358 1ybqB 390 5.432 1xwyA 264 5.668 c.1.9.12 122411 1a0cA 438 6.432 c.1.15.3 29529 2g3fA 421 6.669 1qtwA 285 6.727 c.1.15.1 29392 1yw1A 442 7.436 c.1.16.4 124130 1fxxA 482 7.999 c.55.3.5 33726 1ur4A 399 8.608 c.1.8.3 113402 1o12A 376 8.867 b.92.1.5,c.1.9.10 80758,80759 2d5rA 252 9.026 2i7gA 376 9.295 3cjpA 272 9.98 2icsA 379 10.00 b.92.1.8,c.1.9.14 137241,137242 1zzmA 259 10.48 c.1.9.12 125911 1muwA 386 11.52 c.1.15.3 79495 1a0dA 440 11.98 c.1.15.3 29533 1i60A 278 12.31 c.1.15.4 71118 2oa8A 233 12.48 3c86A 328 13.10 3be7A 408 13.46 1o0yA 260 13.57 c.1.10.1 80756 3b9oA 440 13.84 1ytaA 180 14.46 c.55.3.5 124002 1jvnA 555 14.92 c.1.2.1,c.23.16.1 67355,67356 1gkpA 458 15.99 b.92.1.3,c.1.9.6 70231,70232 1n7kA 234 18.79 c.1.10.1 85374 2pajA 492 18.83 2qxfA 482 20.28 2qw5A 335 21.58 1tvlA 454 21.85 c.1.16.4 107366 1toaA 313 21.91 c.92.2.2 35598 1f07A 321 21.96 c.1.16.3 59560 2g0wA 296 22.29 c.1.15.4 134503 2omkA 231 22.53 1k0fA 277 23.93 c.92.2.2 71974 2q09A 416 24.71 1oltA 457 25.38 c.1.28.2 93334 1i0dA 332 26.07 c.1.9.3 61487 2p1jA 186 26.55 2qpxA 376 27.76 1vbjA 281 28.26 2pgfA 371 32.63 1e8cA 498 32.98 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2uy2A 294 34.34 2f96A 224 34.68 c.55.3.5 133153 1bf6A 291 35.00 c.1.9.3 29065 1ra0A 430 36.20 b.92.1.2,c.1.9.5 111756,111757 2f6kA 307 36.21 c.1.9.15 133047 2csuA 457 37.57 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1k77A 260 39.20 c.1.15.5 72096 1o2dA 371 39.48 e.22.1.2 86591 1orvA 728 41.21 b.70.3.1,c.69.1.24 87354,87355 1bouB 302 41.33 c.56.6.1 33859 2hbjA 410 41.36 a.60.8.4,c.55.3.5 136311,136312 2iyeA 263 41.83 1rrmA 386 42.08 e.22.1.2 105081 2r8wA 332 42.33 3bq5A 766 44.34 1k47A 337 45.69 d.14.1.5,d.58.26.4 72040,72041 1g57A 217 46.91 d.115.1.2 60253 1yacA 208 47.03 c.33.1.3 31757 2i57A 438 48.34 2z1mA 345 48.39 2i5gA 325 48.74 2opjA 327 50.37 2fp4B 395 51.08 c.23.4.1,d.142.1.4 133897,133898 1q6zA 528 53.57 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1jq5A 370 54.60 e.22.1.2 67084 1v58A 241 54.90 c.47.1.9,d.17.3.1 108371,108372 2nxfA 322 57.38 2puzA 419 59.67 1g5bA 221 60.09 d.159.1.3 60261 1ei9A 279 62.24 c.69.1.13 34713 1zi8A 236 63.08 1w0hA 204 63.14 c.55.3.5 114064 3bdiA 207 64.56 2o55A 258 65.31 1dxeA 256 65.64 c.1.12.5 29310 2gwnA 452 65.65 2hbvA 334 66.35 c.1.9.15 136320 2vhlA 396 70.21 1kkhA 317 73.01 d.14.1.5,d.58.26.3 72645,72646 2pg9A 337 74.29 2a6pA 208 74.46 2ihtA 573 74.59 1yixA 265 74.66 c.1.9.12 123371 1f6yA 262 75.58 c.1.21.2 29673 2v8pA 271 75.95 1rk6A 496 76.31 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1bg4A 302 77.26 c.1.8.3 28806 2hhjA 267 78.15 c.60.1.1 136497 2guiA 194 79.17 c.55.3.5 135737 1yrrA 382 79.48 b.92.1.5,c.1.9.10 123935,123936 3ce9A 354 80.07 2yx0A 342 80.18 2q02A 272 80.60 2nlyA 245 81.84 c.6.2.7 138364 2depA 356 84.82 1rkqA 282 85.32 c.108.1.10 97621 2imrA 420 86.54 1j96A 323 87.82 c.1.7.1 71616 1snnA 227 87.87 d.115.1.2 105821 1vljA 407 88.10 e.22.1.2 108832 3c8nA 356 88.17 1h1yA 228 88.29 c.1.2.2 76506 2aamA 309 88.35 c.1.8.15 126489 1wg8A 285 88.58 a.60.13.1,c.66.1.23 114605,114606 2de3A 365 88.67 2b81A 323 88.94