# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.11e-15 1m65A 245 2.97e-12 c.6.3.1 84847 2anuA 255 7.24e-10 c.6.3.1 127058 1v77A 212 7.55e-07 c.6.3.2 108402 2hnhA 910 3.53e-06 1vflA 356 0.5487 c.1.9.1 120041 2ob3A 330 0.7289 1j6oA 268 0.8305 c.1.9.12 77088 2ffiA 288 1.142 c.1.9.15 133385 2qahA 303 1.398 2gzxA 265 3.146 1xwyA 264 3.317 c.1.9.12 122411 2qt3A 403 3.598 1yw1A 442 4.141 c.1.16.4 124130 1gkrA 458 4.749 b.92.1.3,c.1.9.6 70251,70252 2vc7A 314 4.789 2z00A 426 5.023 1a0cA 438 5.156 c.1.15.3 29529 1y97A 238 5.627 c.55.3.5 122773 2gokA 429 5.644 1a0dA 440 6.581 c.1.15.3 29533 2igiA 180 6.699 2i7gA 376 7.129 1i60A 278 7.431 c.1.15.4 71118 1zzmA 259 7.443 c.1.9.12 125911 1fxxA 482 8.325 c.55.3.5 33726 3b9oA 440 9.697 1f07A 321 9.727 c.1.16.3 59560 1qtwA 285 10.00 c.1.15.1 29392 2g3fA 421 10.07 1tvlA 454 10.63 c.1.16.4 107366 3c86A 328 10.88 1o0yA 260 10.98 c.1.10.1 80756 1ur4A 399 11.28 c.1.8.3 113402 1muwA 386 12.10 c.1.15.3 79495 2icsA 379 13.25 b.92.1.8,c.1.9.14 137241,137242 1gkpA 458 13.26 b.92.1.3,c.1.9.6 70231,70232 3be7A 408 14.41 1i0dA 332 15.01 c.1.9.3 61487 1ybqB 390 15.59 2oa8A 233 18.26 3cjpA 272 19.38 1vbjA 281 19.42 1oltA 457 20.03 c.1.28.2 93334 2g0wA 296 20.28 c.1.15.4 134503 2d5rA 252 22.28 1n7kA 234 22.67 c.1.10.1 85374 1k77A 260 22.80 c.1.15.5 72096 1ytaA 180 23.15 c.55.3.5 124002 2qw5A 335 23.15 2omkA 231 23.66 1toaA 313 24.05 c.92.2.2 35598 1jvnA 555 25.44 c.1.2.1,c.23.16.1 67355,67356 2opjA 327 25.70 2pajA 492 27.25 2qxfA 482 27.85 2hbjA 410 29.53 a.60.8.4,c.55.3.5 136311,136312 1yacA 208 29.61 c.33.1.3 31757 2pgfA 371 30.52 2csuA 457 30.56 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2q02A 272 32.23 1k0fA 277 34.91 c.92.2.2 71974 3ciwA 348 35.01 2qpxA 376 35.64 1o12A 376 36.09 b.92.1.5,c.1.9.10 80758,80759 2z1mA 345 36.24 2r8wA 332 37.45 1zi8A 236 39.86 2q09A 416 39.94 1bf6A 291 42.33 c.1.9.3 29065 2p1jA 186 43.45 1ra0A 430 43.73 b.92.1.2,c.1.9.5 111756,111757 2fp4B 395 45.39 c.23.4.1,d.142.1.4 133897,133898 2i5gA 325 45.89 1nqkA 381 46.02 c.1.16.4 92050 1rrmA 386 47.66 e.22.1.2 105081 1bg4A 302 48.21 c.1.8.3 28806 1yixA 265 49.41 c.1.9.12 123371 2b81A 323 50.36 1hw6A 278 50.47 c.1.7.1 61296 1o2dA 371 50.80 e.22.1.2 86591 2f96A 224 50.92 c.55.3.5 133153 1h1yA 228 51.40 c.1.2.2 76506 1e8cA 498 52.20 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1vbuA 328 53.14 c.1.8.3 119963 1k47A 337 56.82 d.14.1.5,d.58.26.4 72040,72041 2i57A 438 57.21 2hbvA 334 57.52 c.1.9.15 136320 2qv5A 261 60.30 2imrA 420 60.56 1jakA 512 60.89 c.1.8.6,d.92.2.1 66472,66473 2v8pA 271 61.50 1zgdA 312 61.85 1tv8A 340 62.57 c.1.28.3 107352 2f6kA 307 63.50 c.1.9.15 133047 2puzA 419 63.97 2cygA 312 65.05 c.1.8.3 131025 2depA 356 66.27 2i9uA 439 69.42 2iyeA 263 70.07 1us0A 316 70.42 c.1.7.1 99850 1jq5A 370 70.50 e.22.1.2 67084 2o55A 258 70.97 2aamA 309 73.37 c.1.8.15 126489 3c8nA 356 73.97 1rvkA 382 74.50 c.1.11.2,d.54.1.1 97928,97929 1qgoA 264 76.20 c.92.1.2 35596 1wg8A 285 77.84 a.60.13.1,c.66.1.23 114605,114606 1w8sA 263 78.58 c.1.10.1 120744 2nqlA 388 79.75 3d0cA 314 80.57 1g5bA 221 80.99 d.159.1.3 60261 1rhcA 330 81.15 c.1.16.3 97468 2pg9A 337 81.64 1bouB 302 83.12 c.56.6.1 33859 2a6pA 208 83.24 2cftA 298 83.58 2nlyA 245 84.82 c.6.2.7 138364 1vc4A 254 85.08 c.1.2.4 100557 1ny1A 240 88.62 c.6.2.3 86395 1dxeA 256 89.28 c.1.12.5 29310 1w0hA 204 89.49 c.55.3.5 114064