# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.58e-16 1m65A 245 7.54e-13 c.6.3.1 84847 2anuA 255 2.59e-10 c.6.3.1 127058 1v77A 212 5.09e-07 c.6.3.2 108402 2hnhA 910 1.89e-06 2ob3A 330 0.6365 1j6oA 268 0.6817 c.1.9.12 77088 2ffiA 288 1.050 c.1.9.15 133385 2qahA 303 1.261 1vflA 356 1.265 c.1.9.1 120041 2gzxA 265 2.485 2vc7A 314 3.682 1gkrA 458 4.449 b.92.1.3,c.1.9.6 70251,70252 2i7gA 376 4.475 1qtwA 285 4.723 c.1.15.1 29392 2igiA 180 4.724 1yw1A 442 4.732 c.1.16.4 124130 1muwA 386 5.312 c.1.15.3 79495 1a0cA 438 5.877 c.1.15.3 29529 1xwyA 264 5.878 c.1.9.12 122411 2z00A 426 6.221 2gokA 429 6.235 2qt3A 403 6.568 1i60A 278 6.776 c.1.15.4 71118 1a0dA 440 7.011 c.1.15.3 29533 1y97A 238 7.041 c.55.3.5 122773 1zzmA 259 8.001 c.1.9.12 125911 2icsA 379 9.166 b.92.1.8,c.1.9.14 137241,137242 1ur4A 399 9.397 c.1.8.3 113402 3c86A 328 10.37 1fxxA 482 10.59 c.55.3.5 33726 1o0yA 260 11.73 c.1.10.1 80756 3b9oA 440 12.57 3cjpA 272 12.78 2g3fA 421 12.84 2pajA 492 12.86 1ybqB 390 13.60 1tvlA 454 13.61 c.1.16.4 107366 1gkpA 458 14.30 b.92.1.3,c.1.9.6 70231,70232 2g0wA 296 14.73 c.1.15.4 134503 1f07A 321 15.21 c.1.16.3 59560 1ytaA 180 15.30 c.55.3.5 124002 2d5rA 252 16.07 1i0dA 332 17.31 c.1.9.3 61487 2qw5A 335 17.39 1jvnA 555 17.66 c.1.2.1,c.23.16.1 67355,67356 2omkA 231 17.84 2oa8A 233 19.61 1k77A 260 19.89 c.1.15.5 72096 3be7A 408 20.05 2q02A 272 20.63 1n7kA 234 21.47 c.1.10.1 85374 1toaA 313 22.14 c.92.2.2 35598 2hbjA 410 25.16 a.60.8.4,c.55.3.5 136311,136312 2csuA 457 25.55 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1vbjA 281 27.07 1k0fA 277 27.12 c.92.2.2 71974 1rrmA 386 27.30 e.22.1.2 105081 2opjA 327 29.05 1bg4A 302 29.73 c.1.8.3 28806 2pgfA 371 29.89 2p1jA 186 30.81 2qxfA 482 31.72 2z1mA 345 32.02 1yacA 208 34.92 c.33.1.3 31757 2i57A 438 35.15 1yixA 265 36.45 c.1.9.12 123371 2r8wA 332 37.92 1bf6A 291 39.55 c.1.9.3 29065 1vbuA 328 39.76 c.1.8.3 119963 2b81A 323 40.26 1o12A 376 43.41 b.92.1.5,c.1.9.10 80758,80759 1oltA 457 45.79 c.1.28.2 93334 2qpxA 376 45.80 1zi8A 236 46.45 2depA 356 46.46 1e8cA 498 47.03 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1k47A 337 47.14 d.14.1.5,d.58.26.4 72040,72041 3ciwA 348 47.33 2puzA 419 52.62 2iyeA 263 55.41 2q09A 416 56.57 2qv5A 261 56.75 1rhcA 330 59.43 c.1.16.3 97468 1ny1A 240 60.68 c.6.2.3 86395 1wg8A 285 61.12 a.60.13.1,c.66.1.23 114605,114606 2fp4B 395 61.56 c.23.4.1,d.142.1.4 133897,133898 1hw6A 278 63.50 c.1.7.1 61296 2v8pA 271 65.62 1h1yA 228 67.17 c.1.2.2 76506 3cnyA 301 67.32 1qgoA 264 68.54 c.92.1.2 35596 1o2dA 371 68.69 e.22.1.2 86591 2pg9A 337 69.03 1dxeA 256 70.04 c.1.12.5 29310 3c8nA 356 70.43 1e8gA 560 71.29 d.58.32.1,d.145.1.1 39455,41718 1ra0A 430 71.81 b.92.1.2,c.1.9.5 111756,111757 2f96A 224 72.06 c.55.3.5 133153 1q6zA 528 72.66 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1zgdA 312 75.08 3bq5A 766 75.50 1bouB 302 76.73 c.56.6.1 33859 1uc8A 280 78.25 c.30.1.6,d.142.1.7 99165,99166 1kkhA 317 78.57 d.14.1.5,d.58.26.3 72645,72646 1zczA 464 79.84 c.24.1.3,c.97.1.4 124923,124924 2e6mA 208 80.12 1us0A 316 80.46 c.1.7.1 99850 1nqkA 381 80.94 c.1.16.4 92050 2nxfA 322 82.41 1j96A 323 82.88 c.1.7.1 71616 2o55A 258 84.87 2imrA 420 86.59 1jakA 512 86.83 c.1.8.6,d.92.2.1 66472,66473 2f6kA 307 88.94 c.1.9.15 133047 2j13A 247 89.26 c.6.2.3 137934