# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.11e-12 1m65A 245 2.48e-10 c.6.3.1 84847 2anuA 255 2.72e-07 c.6.3.1 127058 1v77A 212 3.32e-05 c.6.3.2 108402 2hnhA 910 0.000904 2ffiA 288 0.2631 c.1.9.15 133385 1vflA 356 0.9153 c.1.9.1 120041 1j6oA 268 1.312 c.1.9.12 77088 2qahA 303 1.338 2gzxA 265 1.529 2vc7A 314 1.718 1bf6A 291 1.963 c.1.9.3 29065 1qtwA 285 2.101 c.1.15.1 29392 3cjpA 272 2.905 1a0dA 440 2.987 c.1.15.3 29533 2gokA 429 3.308 2ob3A 330 4.274 2qt3A 403 4.364 1zzmA 259 4.817 c.1.9.12 125911 2qpxA 376 5.506 2qw5A 335 5.996 3c86A 328 6.583 2depA 356 7.012 1f6yA 262 7.743 c.1.21.2 29673 2q09A 416 8.488 3be7A 408 8.654 2g3fA 421 8.668 1ur4A 399 8.878 c.1.8.3 113402 2cygA 312 9.722 c.1.8.3 131025 3bofA 566 10.25 1n7kA 234 10.45 c.1.10.1 85374 2pajA 492 10.81 1muwA 386 11.17 c.1.15.3 79495 1i0dA 332 11.77 c.1.9.3 61487 1a0cA 438 13.06 c.1.15.3 29529 1xwyA 264 13.70 c.1.9.12 122411 2icsA 379 13.81 b.92.1.8,c.1.9.14 137241,137242 1i60A 278 13.90 c.1.15.4 71118 2pgfA 371 14.73 2puzA 419 15.07 3cnyA 301 15.22 2nxfA 322 16.74 2i5gA 325 17.25 1gkpA 458 18.82 b.92.1.3,c.1.9.6 70231,70232 1gkrA 458 20.78 b.92.1.3,c.1.9.6 70251,70252 1rh9A 373 21.20 c.1.8.3 118773 1aq0A 306 21.49 c.1.8.3 28842 1nq6A 302 22.15 c.1.8.3 92046 2ogyA 262 22.78 2hy1A 280 24.70 2v3gA 283 25.01 2ihtA 573 25.66 2citA 282 25.66 c.1.8.3 130499 2z00A 426 25.77 2dskA 311 26.39 1yixA 265 27.70 c.1.9.12 123371 1qwgA 251 28.02 c.1.27.1 96473 2i57A 438 28.60 1o0yA 260 29.75 c.1.10.1 80756 1bg4A 302 29.87 c.1.8.3 28806 2ei9A 240 30.49 2pg9A 337 31.36 1m5wA 243 32.69 c.1.24.1 84836 1k77A 260 32.78 c.1.15.5 72096 1rk6A 496 32.82 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2r6oA 294 34.94 1ny1A 240 34.95 c.6.2.3 86395 2igiA 180 35.25 3ciwA 348 35.62 2o55A 258 35.93 2ejaA 338 37.73 1vcvA 226 39.56 c.1.10.1 119988 1edg 380 39.92 2podA 410 40.97 1yxyA 234 41.90 c.1.2.5 124203 1g5bA 221 42.94 d.159.1.3 60261 2d5rA 252 42.99 1rrmA 386 43.09 e.22.1.2 105081 1y97A 238 43.31 c.55.3.5 122773 2qcvA 332 43.69 1ceoA 343 44.53 c.1.8.3 28808 1xyzA 347 44.53 c.1.8.3 28804 1j79A 347 44.61 c.1.9.4 62675 2e7fA 262 45.57 1ybqB 390 46.61 1twiA 434 47.68 b.49.2.3,c.1.6.1 107399,107400 2jc4A 256 48.48 2aamA 309 48.90 c.1.8.15 126489 2omkA 231 49.67 2q8xA 331 51.06 1qo2A 241 51.38 c.1.2.1 28533 2o14A 375 52.30 1w8sA 263 52.57 c.1.10.1 120744 2hjpA 290 52.73 3cbwA 353 53.01 1kkoA 413 53.92 c.1.11.2,d.54.1.1 68675,68676 1tk9A 188 55.36 c.80.1.3 107082 1ta3B 303 55.45 c.1.8.3 106732 1m6jA 261 55.66 c.1.1.1 78693 1thfD 253 55.81 c.1.2.1 28535 2ps2A 371 56.23 2amxA 376 56.40 c.1.9.1 127024 1vbuA 328 56.49 c.1.8.3 119963 2q02A 272 56.58 2qdeA 397 57.72 2d1zA 436 57.89 2yxtA 312 58.30 2ox4A 403 58.77 1ituA 369 58.93 c.1.9.7 71423 1ytaA 180 59.09 c.55.3.5 124002 3b8iA 287 59.71 1v0lA 313 60.72 c.1.8.3 108207 2dxnA 274 61.83 2qjjA 402 62.59 1rkd 309 64.58 2eg6A 347 64.73 1rhcA 330 65.26 c.1.16.3 97468 1eswA 500 65.35 c.1.8.1 59500 1rvkA 382 67.02 c.1.11.2,d.54.1.1 97928,97929 1rvgA 305 67.16 c.1.10.2 97920 1lt8A 406 67.55 c.1.26.1 78186 1lqaA 346 67.91 c.1.7.1 84674 2eq5A 228 69.37 1oltA 457 70.05 c.1.28.2 93334 1ynpA 317 70.11 1i1wA 303 70.21 c.1.8.3 76732 1d8wA 426 70.31 c.1.15.2 29394 1tv8A 340 72.45 c.1.28.3 107352 1uozA 315 73.34 c.6.1.1 113354 2pn1A 331 74.82 1nowA 507 75.20 c.1.8.6,d.92.2.1 85936,85937 2qs8A 418 76.55 1o2dA 371 77.74 e.22.1.2 86591 1h5yA 253 77.74 c.1.2.1 65638 1vr6A 350 78.12 c.1.10.4 120439 1dkuA 317 80.06 c.61.1.2,c.61.1.2 34118,34119 1p9eA 331 81.02 d.157.1.5 104088 1k7cA 233 82.49 c.23.10.4 68267 3bdiA 207 83.53 2z26A 347 84.71 1bqcA 302 86.15 c.1.8.3 28831 1xg4A 295 86.48 1jflA 228 86.56 c.78.2.1,c.78.2.1 71656,71657 1g0cA 364 87.01 c.1.8.3 60165 1ra0A 430 87.05 b.92.1.2,c.1.9.5 111756,111757 3cz8A 319 87.82 1n82A 331 88.46 c.1.8.3 91703 1y0eA 223 88.69 c.1.2.5 116297 2a0nA 265 88.98 c.1.2.1 125961 1eceA 358 89.77 c.1.8.3 28813