# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.39e-07 1m65A 245 1.09e-05 c.6.3.1 84847 2anuA 255 0.002575 c.6.3.1 127058 2hnhA 910 0.4387 1v77A 212 0.7605 c.6.3.2 108402 2qt3A 403 3.407 3cjpA 272 3.562 2nxfA 322 4.119 1jndA 420 5.971 c.1.8.5,d.26.3.1 71757,71758 2cygA 312 6.175 c.1.8.3 131025 1bf6A 291 6.464 c.1.9.3 29065 1qo2A 241 6.492 c.1.2.1 28533 1yhtA 367 6.660 c.1.8.6 123213 1gkpA 458 6.987 b.92.1.3,c.1.9.6 70231,70232 1wdpA 495 8.900 c.1.8.1 120907 2podA 410 9.829 1phpA 394 9.922 c.86.1.1 35452 1q7zA 566 9.937 c.1.21.2,c.1.26.1 96090,96091 1yixA 265 9.99 c.1.9.12 123371 3be7A 408 10.68 2ffiA 288 11.63 c.1.9.15 133385 1ub3A 220 12.14 c.1.10.1 88395 1dxeA 256 12.67 c.1.12.5 29310 2qw5A 335 14.06 1ra0A 430 15.05 b.92.1.2,c.1.9.5 111756,111757 1vemA 516 15.08 b.3.1.1,c.1.8.1 120021,120022 1v6sA 390 15.33 c.86.1.1 100424 2g0wA 296 15.73 c.1.15.4 134503 2hk0A 309 15.77 2hzgA 401 16.19 2a5hA 416 16.34 1qtwA 285 16.52 c.1.15.1 29392 2pceA 386 16.55 3c86A 328 16.98 1tv8A 340 17.29 c.1.28.3 107352 2pcqA 283 17.35 1gveA 327 17.61 c.1.7.1 70597 1vjpA 394 17.64 c.2.1.3,d.81.1.3 100828,100829 2fb2A 340 18.88 2agkA 260 19.12 2gokA 429 19.87 2i57A 438 20.42 2h0rA 216 20.47 1j6oA 268 20.61 c.1.9.12 77088 2r6oA 294 20.80 1ek6A 348 20.94 c.2.1.2 29800 2puzA 419 21.18 1frb 315 21.22 2gduA 504 21.25 b.71.1.1,c.1.8.1 135032,135033 1gkrA 458 21.34 b.92.1.3,c.1.9.6 70251,70252 1vcvA 226 21.49 c.1.10.1 119988 1xrtA 467 21.49 b.92.1.3,c.1.9.6 122258,122259 1zzmA 259 21.75 c.1.9.12 125911 3cinA 394 22.05 2depA 356 22.33 2rdxA 379 22.75 1gg4A 452 23.00 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1g8mA 593 25.36 c.24.1.3,c.97.1.4 60371,60372 16pkA 415 25.45 c.86.1.1 35454 1n7kA 234 26.59 c.1.10.1 85374 16pk 415 26.68 1auoA 218 27.25 c.69.1.14 34716 1i0dA 332 27.45 c.1.9.3 61487 3canA 182 28.22 1qgoA 264 28.87 c.92.1.2 35596 2oz8A 389 29.02 2aamA 309 29.28 c.1.8.15 126489 1a0cA 438 30.66 c.1.15.3 29529 2qahA 303 31.51 2h8zA 359 31.64 2q8xA 331 32.44 1vflA 356 32.56 c.1.9.1 120041 2nuwA 288 32.98 2bllA 345 33.22 c.2.1.2 128733 2vc7A 314 33.72 1yacA 208 34.31 c.33.1.3 31757 1mzhA 225 34.31 c.1.10.1 79698 1ht6A 405 34.90 b.71.1.1,c.1.8.1 83629,83630 2qzuA 491 35.16 2bogX 286 35.16 1us0A 316 35.44 c.1.7.1 99850 1a0dA 440 35.66 c.1.15.3 29533 2ps2A 371 35.88 1hdiA 413 36.41 c.86.1.1 60964 1im5A 180 36.55 c.33.1.3 66211 3cbwA 353 37.54 1uozA 315 38.38 c.6.1.1 113354 2ftwA 521 38.49 b.92.1.3,c.1.9.6 134083,134084 1n82A 331 38.61 c.1.8.3 91703 2p8bA 369 38.98 1o98A 511 39.30 c.105.1.1,c.76.1.3 86684,86685 1k77A 260 39.39 c.1.15.5 72096 1f2dA 341 41.81 c.79.1.1 35298 1z7bA 358 42.84 c.2.1.2 124599 1rh9A 373 43.14 c.1.8.3 118773 1muwA 386 43.23 c.1.15.3 79495 1ur4A 399 44.07 c.1.8.3 113402 1ceoA 343 44.29 c.1.8.3 28808 2cunA 410 44.55 2pc8A 400 45.18 1nowA 507 45.24 c.1.8.6,d.92.2.1 85936,85937 2p5yA 311 45.29 2qs8A 418 45.57 2q02A 272 45.59 2z00A 426 45.88 1wraA 308 45.92 d.157.1.8 121190 1ynpA 317 46.37 1m5wA 243 46.38 c.1.24.1 84836 3brqA 296 46.50 2gzxA 265 46.66 1i60A 278 46.85 c.1.15.4 71118 1vbuA 328 46.98 c.1.8.3 119963 1ceo 343 47.66 1zjaA 557 48.97 1ivnA 190 49.67 c.23.10.5 83719 3bq5A 766 50.42 1lqaA 346 50.96 c.1.7.1 84674 1uuqA 440 51.84 c.1.8.3 100015 2ho4A 259 52.19 2z1mA 345 52.50 2r6jA 318 52.84 1zgdA 312 53.17 2hq1A 247 53.40 1jvnA 555 54.30 c.1.2.1,c.23.16.1 67355,67356 1orvA 728 56.32 b.70.3.1,c.69.1.24 87354,87355 2v9dA 343 56.72 1rvkA 382 56.98 c.1.11.2,d.54.1.1 97928,97929 1lwjA 441 57.75 b.71.1.1,c.1.8.1 74303,74304 1bli 483 57.82 2i9uA 439 58.43 1vjzA 341 59.57 c.1.8.3 100838 1vc4A 254 59.63 c.1.2.4 100557 2r8cA 426 60.40 1udcA 338 60.90 c.2.1.2 29785 1ohlA 342 61.01 c.1.10.3 87035 2ox4A 403 61.14 2obnA 349 61.58 3bofA 566 62.22 1r7aA 504 62.53 b.71.1.1,c.1.8.1 97192,97193 1t7lA 766 62.76 1aq0A 306 63.51 c.1.8.3 28842 1j0dA 341 63.67 c.79.1.1 83902 1xyzA 347 63.71 c.1.8.3 28804 2fvkA 559 66.31 b.92.1.3,c.1.9.6 134204,134205 1yrrA 382 66.37 b.92.1.5,c.1.9.10 123935,123936 2v5jA 287 66.72 1mv8A 436 67.48 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2eplX 627 68.43 1xwyA 264 69.28 c.1.9.12 122411 1wohA 305 69.36 c.42.1.1 109446 2ag5A 246 70.67 c.2.1.2 126719 2hbvA 334 71.15 c.1.9.15 136320 2bs9A 503 71.96 b.71.1.2,c.1.8.3 129062,129063 2f2hA 773 72.74 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1lt8A 406 74.27 c.1.26.1 78186 1ituA 369 76.11 c.1.9.7 71423 3bc9A 599 76.71 2h7mA 269 77.07 c.2.1.2 136219 1dysA 348 77.69 c.6.1.1 30669 1t5oA 351 77.79 c.124.1.5 106459 1zp4A 304 78.55 3clwA 507 78.76 1sb8A 352 79.01 c.2.1.2 105410 1hdhA 536 80.60 c.76.1.2 65805 2q09A 416 81.12 1kkoA 413 81.69 c.1.11.2,d.54.1.1 68675,68676 2d1zA 436 81.93 1yzyA 413 82.34 c.146.1.1 124292 2gk4A 232 82.51 1j0aA 325 83.15 c.79.1.1 83871 2c4nA 250 85.00 c.108.1.14 129837 2p91A 285 85.28 1a53A 247 85.45 c.1.2.4 28564 1tzjA 338 85.63 c.79.1.1 112868 1orrA 347 85.73 c.2.1.2 93460 1hdoA 206 86.31 c.2.1.2 60965 1p1xA 260 86.35 c.1.10.1 104060 1nvmA 345 86.37 a.5.7.1,c.1.10.5 86249,86250 2cw6A 298 87.10 1g0cA 364 87.40 c.1.8.3 60165 2pozA 392 88.04 1h4pA 408 88.51 c.1.8.3 90617 2d5rA 252 88.90 1zjjA 263 89.85