# List of top-scoring protein chains for T0440.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 5.30e-29 1m65A 245 4.23e-22 c.6.3.1 84847 2anuA 255 7.26e-11 c.6.3.1 127058 2hpiA 1220 1.64e-09 2p1jA 186 2.26e-07 2hqaA 917 0.000849 2hnhA 910 0.000883 1z69A 327 1.029 2fug5 207 1.810 1jndA 420 2.128 c.1.8.5,d.26.3.1 71757,71758 1vpyA 289 2.629 c.1.32.1 113997 2gzxA 265 2.873 2amxA 376 3.151 c.1.9.1 127024 1a4mA 349 3.321 c.1.9.1 29014 2adaA 352 3.377 c.1.9.1 29027 1fkwA 349 3.485 c.1.9.1 29019 1uioA 349 3.534 c.1.9.1 29021 1fkxA 349 3.687 c.1.9.1 29018 1ps6A 328 3.886 c.77.1.3 95070 1ptmA 329 3.911 c.77.1.3 95104 1uipA 349 4.447 c.1.9.1 29022 1r8kA 329 7.991 c.77.1.3 97240 1x9pA 523 8.577 2c6sA 523 8.579 2ogjA 417 9.509 2pgfA 371 10.33 2f96A 224 10.42 c.55.3.5 133153 1djuA 388 11.00 c.67.1.1 59116 1gdeA 389 12.01 c.67.1.1 60456 1f07A 321 12.18 c.1.16.3 59560 1ezwA 349 13.32 c.1.16.3 29558 2eaxA 164 13.98 2eavA 165 14.05 1vp8A 201 15.00 c.49.1.2 113947 2igiA 180 15.18 2a4aA 281 18.96 c.1.10.1 126150 2gzoA 195 19.07 d.310.1.1 135910 2hi1A 330 23.38 5bj4A 385 24.85 c.67.1.1 100875 5bj3A 385 25.41 c.67.1.1 100871 1b5pA 385 26.63 c.67.1.1 90403 1b5oA 385 27.68 c.67.1.1 90401 1wdnA 226 27.89 c.94.1.1 35816 1ojxA 263 29.09 c.1.10.1 93164 2yvtA 260 30.70 1bjwA 382 31.04 c.67.1.1 34349 2bgnE 363 32.11 c.1.9.1 128492 1bkgA 385 32.41 c.67.1.1 34351 1qxlA 356 32.60 c.1.9.1 104644 1w1iE 357 32.65 c.1.9.1 109051 1xoiA 846 33.55 2pz0A 252 33.67 1vflA 356 33.93 c.1.9.1 120041 1w8rA 263 36.96 c.1.10.1 120734 3cemA 809 37.11 1yxoA 328 37.12 1w8sA 263 37.25 c.1.10.1 120744 1v9sA 208 37.68 c.61.1.1 119894 1zzmA 259 38.64 c.1.9.12 125911 1oi8A 532 39.22 d.114.1.1,d.159.1.2 103942,103943 2epgA 487 40.36 1vjzA 341 40.52 c.1.8.3 100838 2v78A 313 40.64 1hp1A 516 41.16 d.114.1.1,d.159.1.2 70976,70977 2atiA 846 41.86 c.87.1.4 127293 1l5sA 847 41.88 c.87.1.4 77716 1hpuA 525 42.37 d.114.1.1,d.159.1.2 70979,70980 2gm2A 132 43.14 1zgdA 312 43.47 2i0zA 447 45.76 1vh1A 256 50.27 c.68.1.13 100632 2vhjA 331 50.52 1ushA 550 51.56 d.114.1.1,d.159.1.2 40923,42079 1oidA 532 54.22 d.114.1.1,d.159.1.2 103952,103953 3boeA 210 54.58 1we0A 187 55.20 c.47.1.10 120930 2vhuA 331 57.74 1w44A 331 58.15 c.37.1.11 114147 2i7gA 376 61.31 1sjdA 368 62.80 c.1.11.2,d.54.1.1 105632,105633 1fc4A 401 63.90 c.67.1.4 59760 1ekeA 230 65.54 c.55.3.1 33572 2cdh0 226 67.52 2p91A 285 68.06 2z06A 252 70.75 1ka2A 499 77.05 d.92.1.5 77305 2vhtA 331 77.07 1x7fA 385 77.76 b.62.1.2,c.1.8.12 109498,109499 1xfxA 777 79.27 3bdmF 287 81.22 2v3uA 265 81.31 2f5xA 312 81.40 1pypA 285 81.81 b.40.5.1 25409 1o7xA 377 84.45 a.103.1.1 81171 1z7qG 288 84.57 d.153.1.4 124654 1kkhA 317 86.35 d.14.1.5,d.58.26.3 72645,72646 2c1iA 431 87.18 c.6.2.3,d.341.1.1 129636,129637 2c1gA 431 87.64 c.6.2.3,d.341.1.1 129632,129633