# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 5.50e-20 1m65A 245 4.32e-14 c.6.3.1 84847 2anuA 255 1.18e-10 c.6.3.1 127058 2hnhA 910 5.79e-08 2p1jA 186 0.07397 1v77A 212 0.1723 c.6.3.2 108402 2ob3A 330 0.9883 1j9aA 184 1.261 c.55.3.5 84135 1wljA 189 1.415 c.55.3.5 114734 1ytaA 180 1.635 c.55.3.5 124002 1w1iE 357 3.018 c.1.9.1 109051 1w8sA 263 3.257 c.1.10.1 120744 2igiA 180 3.303 1j53A 186 3.491 c.55.3.5 77076 2qw5A 335 3.599 1i0dA 332 4.793 c.1.9.3 61487 1jq5A 370 5.088 e.22.1.2 67084 1yx1A 264 5.477 c.1.15.7 124169 2guiA 194 5.487 c.55.3.5 135737 1zuaX 317 5.590 1w0hA 204 5.852 c.55.3.5 114064 3c86A 328 6.158 1o0yA 260 6.437 c.1.10.1 80756 1ojxA 263 6.863 c.1.10.1 93164 1y0eA 223 6.983 c.1.2.5 116297 2gzxA 265 8.646 1j54A 186 8.811 c.55.3.5 77077 1fkx 349 9.058 1hw6A 278 9.384 c.1.7.1 61296 2amxA 376 10.10 c.1.9.1 127024 2q02A 272 10.39 2agtA 319 10.48 2ehhA 294 11.27 1lvwA 295 11.29 c.68.1.6 84723 1ezwA 349 11.34 c.1.16.3 29558 1yw1A 442 11.49 c.1.16.4 124130 1tv8A 340 11.74 c.1.28.3 107352 2i7gA 376 12.85 1rxyA 253 13.17 c.56.2.1 98065 2qahA 303 13.45 2vc7A 314 14.43 1a4mA 349 14.93 c.1.9.1 29014 3b9oA 440 15.39 2ac7A 235 15.92 c.56.2.1 126543 1fxoA 293 16.26 c.68.1.6 34524 2bp1A 360 17.59 2hk0A 309 18.72 2hejA 323 18.81 1yxyA 234 19.09 c.1.2.5 124203 2dskA 311 19.54 2f96A 224 20.38 c.55.3.5 133153 1gkrA 458 21.42 b.92.1.3,c.1.9.6 70251,70252 3cnyA 301 22.83 2pcqA 283 23.96 1nuuA 252 24.64 c.26.1.3 86209 1pszA 303 25.06 c.92.2.2 35600 2rfgA 297 25.15 2pgfA 371 25.34 1k77A 260 27.22 c.1.15.5 72096 2ao0A 324 27.74 1korA 400 28.41 c.26.2.1,d.210.1.1 72824,72825 1vflA 356 28.53 c.1.9.1 120041 2d2jA 329 29.27 c.1.9.3 131175 2ffiA 288 30.43 c.1.9.15 133385 1n82A 331 31.10 c.1.8.3 91703 1y97A 238 31.73 c.55.3.5 122773 1qtwA 285 33.16 c.1.15.1 29392 1zgdA 312 33.24 2tpsA 227 33.32 c.1.3.1 28591 1frb 315 33.46 1bn7A 294 34.25 c.69.1.8 34677 1gveA 327 34.38 c.1.7.1 70597 1h5yA 253 34.80 c.1.2.1 65638 1vbjA 281 34.84 1yumA 242 35.01 1i60A 278 35.92 c.1.15.4 71118 1mp4A 292 36.05 c.68.1.6 79376 1mi3A 322 36.25 c.1.7.1 91274 2uz0A 263 36.42 1ars 396 36.49 2g0wA 296 36.73 c.1.15.4 134503 1xwyA 264 38.26 c.1.9.12 122411 1ede 310 39.39 2z06A 252 39.58 1ynpA 317 39.78 2ho4A 259 40.22 1f07A 321 41.35 c.1.16.3 59560 1o2dA 371 41.66 e.22.1.2 86591 1oj7A 408 43.32 e.22.1.2 103971 2ahrA 259 44.06 a.100.1.10,c.2.1.6 126775,126776 2d59A 144 44.31 c.2.1.8 131266 3cu2A 237 44.49 1l6sA 323 44.83 c.1.10.3 73627 1yixA 265 45.25 c.1.9.12 123371 1tvlA 454 45.38 c.1.16.4 107366 1bf6A 291 45.97 c.1.9.3 29065 1n7kA 234 48.22 c.1.10.1 85374 1dqsA 393 48.68 e.22.1.1 43347 1qisA 396 48.79 c.67.1.1 34284 1jlnA 297 48.92 c.45.1.2 63172 2gokA 429 49.43 1qfeA 252 50.08 c.1.10.1 29167 1gqnA 252 52.94 c.1.10.1 90514 1lucB 324 53.46 c.1.16.1 29548 1j96A 323 54.42 c.1.7.1 71616 1vlwA 217 55.29 c.1.10.1 108868 1zzmA 259 56.59 c.1.9.12 125911 2r8wA 332 57.18 1qopA 268 57.54 c.1.2.4 28570 1vl2A 421 57.66 c.26.2.1,d.210.1.1 108708,108709 2b81A 323 58.01 1rrmA 386 58.94 e.22.1.2 105081 1ads 315 59.39 2a0nA 265 59.66 c.1.2.1 125961 1j6oA 268 60.15 c.1.9.12 77088 3xis 387 60.46 1o5kA 306 60.56 c.1.10.1 92504 1gl6A 436 61.47 c.37.1.11 70259 2nuwA 288 62.07 1mzhA 225 63.12 c.1.10.1 79698 3ciwA 348 64.10 1xp3A 307 65.37 c.1.15.1 122210 1yc5A 246 66.46 c.31.1.5 122910 1gkpA 458 66.79 b.92.1.3,c.1.9.6 70231,70232 1kq3A 376 66.90 e.22.1.2 68790 2r91A 286 67.16 1fobA 334 67.26 c.1.8.3 83255 1itcA 516 67.48 b.3.1.1,c.1.8.1 83705,83706 2i1qA 322 67.90 a.60.4.1,c.37.1.11 136984,136985 1ks9A 291 71.29 a.100.1.7,c.2.1.6 68857,68858 1qwkA 317 71.60 c.1.7.1 96482 2ojpA 292 71.73 1g57A 217 72.23 d.115.1.2 60253 2v5jA 287 72.29 2cbiA 594 73.22 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 1rpxA 230 73.38 c.1.2.2 28536 1zosA 230 73.49 1vljA 407 76.29 e.22.1.2 108832 1h5rA 293 77.02 c.68.1.6 65623 1cozA 129 77.31 c.26.1.2 31598 2ftwA 521 78.28 b.92.1.3,c.1.9.6 134083,134084 1o98A 511 78.73 c.105.1.1,c.76.1.3 86684,86685 1xrtA 467 79.14 b.92.1.3,c.1.9.6 122258,122259 1us0A 316 80.26 c.1.7.1 99850 2gfiA 458 81.56 2e7fA 262 84.76 1z15A 344 85.21 1eg5A 384 86.77 c.67.1.3 34429 2rbkA 261 87.33 2qt3A 403 87.71 1odkA 235 87.88 c.56.2.1 86863 2nlyA 245 88.06 c.6.2.7 138364 1lucA 355 89.16 c.1.16.1 29547 1ra0A 430 89.26 b.92.1.2,c.1.9.5 111756,111757 1vicA 262 89.93 c.68.1.13 100756