# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.67e-20 1m65A 245 4.60e-14 c.6.3.1 84847 2anuA 255 9.46e-11 c.6.3.1 127058 2hnhA 910 6.52e-08 2p1jA 186 0.04901 1j9aA 184 0.8087 c.55.3.5 84135 1ytaA 180 0.8992 c.55.3.5 124002 1v77A 212 0.9693 c.6.3.2 108402 1wljA 189 1.827 c.55.3.5 114734 2ob3A 330 1.995 1j53A 186 2.244 c.55.3.5 77076 2igiA 180 2.731 1w1iE 357 2.953 c.1.9.1 109051 1w8sA 263 3.480 c.1.10.1 120744 1jq5A 370 3.592 e.22.1.2 67084 1w0hA 204 3.622 c.55.3.5 114064 1i0dA 332 3.992 c.1.9.3 61487 2guiA 194 4.349 c.55.3.5 135737 1o0yA 260 4.440 c.1.10.1 80756 1yx1A 264 5.716 c.1.15.7 124169 1zuaX 317 5.976 2qw5A 335 6.222 1ojxA 263 6.711 c.1.10.1 93164 2gzxA 265 6.727 1j54A 186 6.828 c.55.3.5 77077 2qahA 303 7.149 1y0eA 223 8.357 c.1.2.5 116297 2ehhA 294 8.907 3c86A 328 10.21 2i7gA 376 10.93 1o2dA 371 11.03 e.22.1.2 86591 1yw1A 442 11.85 c.1.16.4 124130 2hk0A 309 12.73 1tv8A 340 13.57 c.1.28.3 107352 1ezwA 349 13.80 c.1.16.3 29558 3b9oA 440 14.40 1lvwA 295 14.51 c.68.1.6 84723 1a4mA 349 15.79 c.1.9.1 29014 1gkrA 458 16.01 b.92.1.3,c.1.9.6 70251,70252 2f96A 224 16.90 c.55.3.5 133153 3cjpA 272 18.64 1fkx 349 19.05 1nuuA 252 21.49 c.26.1.3 86209 2agtA 319 21.74 2pcqA 283 22.10 1fxoA 293 22.12 c.68.1.6 34524 2dskA 311 22.71 2q02A 272 23.41 1hw6A 278 23.82 c.1.7.1 61296 1yxyA 234 25.38 c.1.2.5 124203 2amxA 376 25.90 c.1.9.1 127024 2hejA 323 27.07 1rxyA 253 27.97 c.56.2.1 98065 2ojpA 292 27.98 2gfiA 458 28.13 2nuwA 288 28.41 1vflA 356 28.56 c.1.9.1 120041 1vljA 407 29.00 e.22.1.2 108832 1y97A 238 29.62 c.55.3.5 122773 1korA 400 29.93 c.26.2.1,d.210.1.1 72824,72825 1gkpA 458 30.45 b.92.1.3,c.1.9.6 70231,70232 1k77A 260 31.15 c.1.15.5 72096 2vc7A 314 31.36 1dqsA 393 31.77 e.22.1.1 43347 1kq3A 376 32.50 e.22.1.2 68790 1tvlA 454 33.46 c.1.16.4 107366 2bp1A 360 33.46 2r8wA 332 34.63 1frb 315 35.18 1bf6A 291 35.89 c.1.9.3 29065 1ede 310 37.85 2d59A 144 39.03 c.2.1.8 131266 1qtwA 285 40.01 c.1.15.1 29392 1pszA 303 41.00 c.92.2.2 35600 2rfgA 297 41.39 2g0wA 296 41.62 c.1.15.4 134503 1mp4A 292 42.21 c.68.1.6 79376 3ciwA 348 42.86 2cbiA 594 44.17 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 1o5kA 306 45.01 c.1.10.1 92504 1bn7A 294 45.30 c.69.1.8 34677 1nofA 383 46.01 b.71.1.2,c.1.8.3 92020,92021 1n82A 331 46.04 c.1.8.3 91703 1ars 396 46.55 3cnyA 301 46.58 1qisA 396 46.76 c.67.1.1 34284 2d2jA 329 46.77 c.1.9.3 131175 2ac7A 235 47.50 c.56.2.1 126543 1yumA 242 49.61 1nal1 297 50.28 2ahrA 259 50.84 a.100.1.10,c.2.1.6 126775,126776 1oj7A 408 51.50 e.22.1.2 103971 1o98A 511 52.29 c.105.1.1,c.76.1.3 86684,86685 2ho4A 259 53.65 2pgfA 371 53.92 1rrmA 386 55.82 e.22.1.2 105081 2gokA 429 56.00 1mzhA 225 56.07 c.1.10.1 79698 1zgdA 312 56.63 2r91A 286 58.76 1zosA 230 61.95 1yixA 265 62.65 c.1.9.12 123371 2atsA 292 65.04 c.1.10.1 127306 2ftwA 521 65.09 b.92.1.3,c.1.9.6 134083,134084 1rpxA 230 65.29 c.1.2.2 28536 1itcA 516 65.33 b.3.1.1,c.1.8.1 83705,83706 1onwA 390 65.86 b.92.1.7,c.1.9.13 87172,87173 1f6yA 262 66.11 c.1.21.2 29673 1h5rA 293 66.47 c.68.1.6 65623 2v9dA 343 66.82 1j96A 323 66.84 c.1.7.1 71616 1n7kA 234 67.18 c.1.10.1 85374 1vl2A 421 68.71 c.26.2.1,d.210.1.1 108708,108709 1qopA 268 69.06 c.1.2.4 28570 1l6sA 323 71.18 c.1.10.3 73627 1qfeA 252 71.30 c.1.10.1 29167 1mi3A 322 71.31 c.1.7.1 91274 1gl6A 436 71.41 c.37.1.11 70259 1lucB 324 72.07 c.1.16.1 29548 1gqnA 252 72.74 c.1.10.1 90514 2purA 292 72.77 2yx0A 342 73.43 1w3iA 293 74.38 c.1.10.1 109152 3ce9A 354 75.07 2fb2A 340 76.16 1tzfA 259 76.26 c.68.1.13 107476 1ads 315 76.63 2oa8A 233 79.30 1dhpA 292 79.35 c.1.10.1 29097 2qxfA 482 80.77 1vbjA 281 81.31 3cu2A 237 82.02 2fbyA 205 82.20 1r0kA 388 83.79 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2tpsA 227 84.74 c.1.3.1 28591 1i60A 278 84.80 c.1.15.4 71118 1rvgA 305 85.22 c.1.10.2 97920 1vcvA 226 85.71 c.1.10.1 119988 1nrwA 288 85.95 c.108.1.10 86128 1zccA 248 86.03 c.1.18.3 124903 1vkhA 273 86.42 c.69.1.32 108662 1kmqA 184 86.62 c.37.1.8 84412 1xp3A 307 87.44 c.1.15.1 122210 2v5jA 287 88.19 1vpqA 273 88.56 c.1.32.1 113974 2e7fA 262 89.45 1rzmA 338 89.79 c.1.10.4 105137