# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.07e-18 1m65A 245 2.64e-12 c.6.3.1 84847 2anuA 255 1.72e-09 c.6.3.1 127058 2hnhA 910 1.53e-07 2p1jA 186 0.1752 1j9aA 184 0.6318 c.55.3.5 84135 1v77A 212 0.7177 c.6.3.2 108402 2ob3A 330 1.128 1w1iE 357 1.650 c.1.9.1 109051 1ytaA 180 2.013 c.55.3.5 124002 1wljA 189 2.040 c.55.3.5 114734 2igiA 180 3.151 1fkx 349 3.341 1w8sA 263 4.163 c.1.10.1 120744 3c86A 328 5.878 1i0dA 332 5.952 c.1.9.3 61487 1j53A 186 6.725 c.55.3.5 77076 2ehhA 294 6.813 2qw5A 335 7.157 1yx1A 264 7.416 c.1.15.7 124169 2vc7A 314 7.788 1jq5A 370 8.023 e.22.1.2 67084 2d2jA 329 8.438 c.1.9.3 131175 1o0yA 260 8.443 c.1.10.1 80756 1w0hA 204 8.819 c.55.3.5 114064 2agtA 319 9.019 2q02A 272 9.391 1zuaX 317 9.584 2guiA 194 9.806 c.55.3.5 135737 1y0eA 223 9.894 c.1.2.5 116297 2amxA 376 10.95 c.1.9.1 127024 1a4mA 349 11.19 c.1.9.1 29014 1bf6A 291 12.74 c.1.9.3 29065 1j54A 186 13.60 c.55.3.5 77077 2tpsA 227 13.86 c.1.3.1 28591 1ojxA 263 14.36 c.1.10.1 93164 2bp1A 360 15.30 1yw1A 442 15.39 c.1.16.4 124130 2i7gA 376 15.88 1zgdA 312 16.10 2f96A 224 16.30 c.55.3.5 133153 1gkrA 458 16.32 b.92.1.3,c.1.9.6 70251,70252 1o2dA 371 16.76 e.22.1.2 86591 2ao0A 324 17.07 1hw6A 278 17.22 c.1.7.1 61296 1vljA 407 18.03 e.22.1.2 108832 1k77A 260 19.62 c.1.15.5 72096 3cnyA 301 20.14 2rfgA 297 20.44 1o5kA 306 20.54 c.1.10.1 92504 2g0wA 296 21.16 c.1.15.4 134503 1f6yA 262 21.30 c.1.21.2 29673 3cjpA 272 22.42 1rrmA 386 22.90 e.22.1.2 105081 2j6vA 301 23.23 1zzmA 259 23.55 c.1.9.12 125911 2hk0A 309 24.26 2r8wA 332 24.84 2pcqA 283 25.20 1n7kA 234 26.19 c.1.10.1 85374 1i60A 278 26.25 c.1.15.4 71118 2gzxA 265 26.35 3b9oA 440 26.62 1qtwA 285 26.87 c.1.15.1 29392 2r91A 286 27.64 1vbjA 281 28.31 1tv8A 340 28.48 c.1.28.3 107352 2hejA 323 28.73 1fxoA 293 28.80 c.68.1.6 34524 1ezwA 349 28.98 c.1.16.3 29558 1vicA 262 29.13 c.68.1.13 100756 1lqaA 346 30.22 c.1.7.1 84674 1zsxA 347 31.38 1yxyA 234 31.48 c.1.2.5 124203 2d59A 144 31.83 c.2.1.8 131266 1yixA 265 32.63 c.1.9.12 123371 1gveA 327 33.10 c.1.7.1 70597 1nal1 297 33.63 1ars 396 33.86 1qwkA 317 34.08 c.1.7.1 96482 1gvfA 286 34.51 c.1.10.2 70599 3cu2A 237 34.79 1lvwA 295 35.30 c.68.1.6 84723 1a0dA 440 35.33 c.1.15.3 29533 2qv5A 261 35.34 2jfuA 291 35.62 1ads 315 35.92 1ynpA 317 37.74 1qisA 396 38.71 c.67.1.1 34284 1vlwA 217 39.01 c.1.10.1 108868 2purA 292 39.15 2ffiA 288 39.26 c.1.9.15 133385 1dhpA 292 39.30 c.1.10.1 29097 2ojpA 292 39.62 1l6sA 323 40.63 c.1.10.3 73627 3ciwA 348 41.70 1frb 315 42.29 3xis 387 42.55 1vflA 356 43.63 c.1.9.1 120041 1rxyA 253 44.71 c.56.2.1 98065 2atsA 292 46.21 c.1.10.1 127306 1us0A 316 46.43 c.1.7.1 99850 2i1qA 322 47.01 a.60.4.1,c.37.1.11 136984,136985 2qahA 303 47.79 1tvlA 454 48.55 c.1.16.4 107366 2f06A 144 49.06 d.58.18.11,d.58.18.11 132652,132653 2uz0A 263 49.99 1ra0A 430 52.42 b.92.1.2,c.1.9.5 111756,111757 2ac7A 235 52.67 c.56.2.1 126543 2v9dA 343 52.76 1n82A 331 53.13 c.1.8.3 91703 1mp4A 292 53.86 c.68.1.6 79376 2dskA 311 54.07 2ahrA 259 54.10 a.100.1.10,c.2.1.6 126775,126776 1mi3A 322 54.55 c.1.7.1 91274 2nuwA 288 56.18 1xwyA 264 56.62 c.1.9.12 122411 1h5yA 253 57.32 c.1.2.1 65638 1pszA 303 57.36 c.92.2.2 35600 2ftwA 521 58.03 b.92.1.3,c.1.9.6 134083,134084 2pgfA 371 59.30 3c8nA 356 59.44 2e7fA 262 59.62 1tzfA 259 60.33 c.68.1.13 107476 2ho4A 259 61.66 1hrkA 359 62.29 c.92.1.1 61228 1y97A 238 64.60 c.55.3.5 122773 1j96A 323 67.10 c.1.7.1 71616 1dqsA 393 68.26 e.22.1.1 43347 1g57A 217 68.86 d.115.1.2 60253 1l2uA 245 69.43 c.1.2.3 73516 1rlzA 369 69.93 c.31.1.1 104989 2qulA 290 70.14 2rbkA 261 70.98 1gg4A 452 71.00 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1qfeA 252 71.34 c.1.10.1 29167 1nuuA 252 72.66 c.26.1.3 86209 1yc5A 246 72.86 c.31.1.5 122910 3buvA 326 73.69 2o1eA 312 74.29 1qopA 268 74.48 c.1.2.4 28570 1xp3A 307 75.07 c.1.15.1 122210 1qf9A 194 75.91 c.37.1.1 31848 1kq3A 376 76.39 e.22.1.2 68790 2f4dA 184 76.86 1gqnA 252 77.12 c.1.10.1 90514 1wd7A 261 79.12 c.113.1.1 114526 1nrwA 288 79.18 c.108.1.10 86128 1korA 400 79.35 c.26.2.1,d.210.1.1 72824,72825 1rvgA 305 79.58 c.1.10.2 97920 2c4nA 250 81.35 c.108.1.14 129837 1wviA 257 81.89 c.108.1.14 114915 2a0nA 265 82.12 c.1.2.1 125961 1vl2A 421 83.43 c.26.2.1,d.210.1.1 108708,108709 1f07A 321 84.24 c.1.16.3 59560 2ogyA 262 85.53 2bgsA 344 86.00 1h5rA 293 86.20 c.68.1.6 65623 1tksA 204 86.56 d.115.1.2 107114 2iswA 323 86.59 1gzgA 337 89.02 c.1.10.3 70805