# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.59e-20 1m65A 245 7.25e-14 c.6.3.1 84847 2anuA 255 5.07e-11 c.6.3.1 127058 2hnhA 910 5.65e-08 2p1jA 186 0.07009 1v77A 212 0.09603 c.6.3.2 108402 2ob3A 330 0.5387 1ytaA 180 0.6818 c.55.3.5 124002 1wljA 189 1.022 c.55.3.5 114734 1j9aA 184 1.216 c.55.3.5 84135 1w1iE 357 1.786 c.1.9.1 109051 1w0hA 204 1.968 c.55.3.5 114064 2igiA 180 2.072 1i0dA 332 2.174 c.1.9.3 61487 2gzxA 265 3.428 1w8sA 263 3.852 c.1.10.1 120744 1j53A 186 4.291 c.55.3.5 77076 3c86A 328 4.741 2ehhA 294 5.254 2qw5A 335 5.881 1o0yA 260 6.453 c.1.10.1 80756 2d2jA 329 6.932 c.1.9.3 131175 2guiA 194 7.062 c.55.3.5 135737 1jq5A 370 7.461 e.22.1.2 67084 2vc7A 314 7.756 2agtA 319 8.118 1a4mA 349 9.544 c.1.9.1 29014 1hw6A 278 10.35 c.1.7.1 61296 3b9oA 440 10.82 1yx1A 264 10.88 c.1.15.7 124169 1j54A 186 11.56 c.55.3.5 77077 1fkx 349 11.85 2amxA 376 11.87 c.1.9.1 127024 1ojxA 263 12.07 c.1.10.1 93164 1i60A 278 12.56 c.1.15.4 71118 1zuaX 317 12.72 2rfgA 297 12.90 2hk0A 309 14.23 1ezwA 349 14.34 c.1.16.3 29558 1o5kA 306 14.79 c.1.10.1 92504 1yw1A 442 14.80 c.1.16.4 124130 2q02A 272 15.00 2f96A 224 15.84 c.55.3.5 133153 2pcqA 283 16.30 1pszA 303 16.62 c.92.2.2 35600 1vflA 356 16.71 c.1.9.1 120041 1s2oA 244 16.80 c.108.1.10 118846 2i7gA 376 16.87 1lucB 324 18.92 c.1.16.1 29548 2ac7A 235 19.47 c.56.2.1 126543 2ojpA 292 19.60 1nuuA 252 20.15 c.26.1.3 86209 1y97A 238 20.25 c.55.3.5 122773 1k77A 260 21.43 c.1.15.5 72096 1bf6A 291 22.23 c.1.9.3 29065 1qtwA 285 22.41 c.1.15.1 29392 2hejA 323 23.34 2r8wA 332 23.90 1ars 396 26.46 1tvlA 454 27.59 c.1.16.4 107366 2qahA 303 28.01 1tv8A 340 28.86 c.1.28.3 107352 2dskA 311 34.00 3xis 387 34.32 2c4nA 250 34.37 c.108.1.14 129837 1qisA 396 34.86 c.67.1.1 34284 1rxyA 253 35.76 c.56.2.1 98065 1xwyA 264 35.76 c.1.9.12 122411 1xp3A 307 36.88 c.1.15.1 122210 1o2dA 371 37.81 e.22.1.2 86591 2ho4A 259 38.00 1korA 400 38.30 c.26.2.1,d.210.1.1 72824,72825 1mi3A 322 41.11 c.1.7.1 91274 2r91A 286 41.24 2bp1A 360 41.76 1qfeA 252 43.03 c.1.10.1 29167 1frb 315 43.16 1gqnA 252 43.42 c.1.10.1 90514 1j96A 323 44.25 c.1.7.1 71616 1eg5A 384 44.69 c.67.1.3 34429 1vlwA 217 44.90 c.1.10.1 108868 2gfiA 458 45.45 2cbiA 594 45.84 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2v9dA 343 45.90 2atsA 292 46.05 c.1.10.1 127306 2nuwA 288 46.37 2ffiA 288 47.29 c.1.9.15 133385 2uz0A 263 47.43 3cnyA 301 47.65 1y0eA 223 47.89 c.1.2.5 116297 1zgdA 312 48.24 1ads 315 48.40 1yc5A 246 49.66 c.31.1.5 122910 1lvwA 295 50.78 c.68.1.6 84723 3c8nA 356 50.88 1us0A 316 50.89 c.1.7.1 99850 1gg4A 452 51.12 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2b81A 323 51.13 2ahrA 259 51.42 a.100.1.10,c.2.1.6 126775,126776 1nal1 297 52.49 1yumA 242 52.78 2pgfA 371 52.80 1lucA 355 53.11 c.1.16.1 29547 2jfuA 291 53.92 2d59A 144 54.09 c.2.1.8 131266 2purA 292 54.85 1n7kA 234 56.38 c.1.10.1 85374 1vljA 407 56.40 e.22.1.2 108832 1nqkA 381 56.50 c.1.16.4 92050 1dqsA 393 56.96 e.22.1.1 43347 2g0wA 296 57.49 c.1.15.4 134503 2ao0A 324 58.83 2e7fA 262 59.42 2z06A 252 59.66 2qedA 258 59.67 1dhpA 292 59.71 c.1.10.1 29097 1h5yA 253 59.90 c.1.2.1 65638 2fi1A 190 61.86 c.108.1.3 133508 3b4uA 294 63.90 2j6vA 301 65.05 1pq4A 291 66.00 c.92.2.2 94995 2qulA 290 68.56 1zzmA 259 68.69 c.1.9.12 125911 1nrwA 288 69.99 c.108.1.10 86128 2f5xA 312 70.03 1ks9A 291 70.79 a.100.1.7,c.2.1.6 68857,68858 2a6nA 292 70.86 c.1.10.1 126289 1vl2A 421 73.22 c.26.2.1,d.210.1.1 108708,108709 1l2uA 245 73.77 c.1.2.3 73516 1oj7A 408 75.08 e.22.1.2 103971 1o98A 511 75.19 c.105.1.1,c.76.1.3 86684,86685 1bn7A 294 75.99 c.69.1.8 34677 1yixA 265 76.20 c.1.9.12 123371 1rzmA 338 77.35 c.1.10.4 105137 1fxoA 293 77.58 c.68.1.6 34524 1b5pA 385 77.74 c.67.1.1 90403 1zsxA 347 78.25 1v5xA 203 78.52 c.1.2.4 100377 1gkpA 458 79.58 b.92.1.3,c.1.9.6 70231,70232 1mzhA 225 79.94 c.1.10.1 79698 1l6sA 323 80.77 c.1.10.3 73627 1evyA 366 82.81 a.100.1.6,c.2.1.6 18811,30215 2a6lA 292 82.91 c.1.10.1 126285 2oa8A 233 83.76 1j6oA 268 83.84 c.1.9.12 77088 1n82A 331 85.00 c.1.8.3 91703 1vhwA 253 85.99 c.56.2.1 100706 1qf9A 194 86.00 c.37.1.1 31848 1rrmA 386 87.42 e.22.1.2 105081 1wd7A 261 89.66 c.113.1.1 114526