# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 5.41e-21 1m65A 245 9.32e-15 c.6.3.1 84847 2anuA 255 2.38e-11 c.6.3.1 127058 2hnhA 910 2.54e-08 2p1jA 186 0.05834 1v77A 212 0.06822 c.6.3.2 108402 2ob3A 330 0.4372 1ytaA 180 0.6722 c.55.3.5 124002 1j9aA 184 0.9426 c.55.3.5 84135 1wljA 189 1.116 c.55.3.5 114734 1i0dA 332 2.166 c.1.9.3 61487 2igiA 180 2.422 1w0hA 204 2.675 c.55.3.5 114064 1w8sA 263 3.010 c.1.10.1 120744 1j53A 186 3.103 c.55.3.5 77076 1w1iE 357 3.433 c.1.9.1 109051 1o0yA 260 3.791 c.1.10.1 80756 3c86A 328 4.545 2guiA 194 5.516 c.55.3.5 135737 2vc7A 314 6.669 2gzxA 265 7.543 2d2jA 329 7.578 c.1.9.3 131175 1ojxA 263 8.234 c.1.10.1 93164 1a4mA 349 9.043 c.1.9.1 29014 2qw5A 335 9.366 1pszA 303 9.714 c.92.2.2 35600 1fkx 349 9.926 1j54A 186 9.99 c.55.3.5 77077 1yx1A 264 10.34 c.1.15.7 124169 1hw6A 278 10.81 c.1.7.1 61296 2ehhA 294 10.88 2agtA 319 10.99 1jq5A 370 11.20 e.22.1.2 67084 2i7gA 376 11.55 2hk0A 309 12.03 1s2oA 244 13.68 c.108.1.10 118846 3b9oA 440 14.28 2amxA 376 14.42 c.1.9.1 127024 1zuaX 317 14.74 1yw1A 442 15.15 c.1.16.4 124130 1ezwA 349 15.78 c.1.16.3 29558 1y97A 238 16.27 c.55.3.5 122773 1vflA 356 17.71 c.1.9.1 120041 2ac7A 235 18.53 c.56.2.1 126543 2qahA 303 20.14 1k77A 260 20.26 c.1.15.5 72096 1y0eA 223 20.43 c.1.2.5 116297 1bf6A 291 20.87 c.1.9.3 29065 1lucB 324 21.38 c.1.16.1 29548 1i60A 278 21.75 c.1.15.4 71118 1tv8A 340 22.44 c.1.28.3 107352 2pcqA 283 22.56 2q02A 272 23.44 1nuuA 252 23.52 c.26.1.3 86209 2hejA 323 24.20 2f96A 224 24.39 c.55.3.5 133153 1eg5A 384 24.49 c.67.1.3 34429 1qtwA 285 26.16 c.1.15.1 29392 1ars 396 26.23 1rxyA 253 26.23 c.56.2.1 98065 2z06A 252 27.72 2rfgA 297 29.54 1xp3A 307 30.74 c.1.15.1 122210 3xis 387 31.47 1tvlA 454 31.50 c.1.16.4 107366 1o5kA 306 31.89 c.1.10.1 92504 1pq4A 291 32.64 c.92.2.2 94995 1qisA 396 33.74 c.67.1.1 34284 3cnyA 301 34.66 1yc5A 246 35.37 c.31.1.5 122910 2uz0A 263 36.37 2gfiA 458 37.20 2dskA 311 37.46 2ahrA 259 39.25 a.100.1.10,c.2.1.6 126775,126776 1vlwA 217 40.17 c.1.10.1 108868 1lvwA 295 40.52 c.68.1.6 84723 2ao0A 324 41.21 2pgfA 371 41.69 2ho4A 259 41.84 2bp1A 360 42.02 1gkpA 458 42.18 b.92.1.3,c.1.9.6 70231,70232 1korA 400 43.57 c.26.2.1,d.210.1.1 72824,72825 1zgdA 312 44.58 2dejA 350 45.98 2ojpA 292 46.48 1fxoA 293 46.77 c.68.1.6 34524 2ffiA 288 47.96 c.1.9.15 133385 1j96A 323 48.22 c.1.7.1 71616 2d59A 144 51.37 c.2.1.8 131266 1yumA 242 51.75 2b81A 323 51.92 3c8nA 356 51.96 2c4nA 250 52.45 c.108.1.14 129837 2r8wA 332 53.12 1gg4A 452 54.44 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1n7kA 234 55.84 c.1.10.1 85374 1xwyA 264 55.91 c.1.9.12 122411 2g0wA 296 56.13 c.1.15.4 134503 1rzmA 338 56.56 c.1.10.4 105137 1mi3A 322 57.49 c.1.7.1 91274 1vl2A 421 58.89 c.26.2.1,d.210.1.1 108708,108709 1n82A 331 59.70 c.1.8.3 91703 1nrwA 288 61.12 c.108.1.10 86128 2gokA 429 61.12 1gqnA 252 62.13 c.1.10.1 90514 2nuwA 288 62.90 1nqkA 381 63.28 c.1.16.4 92050 1bn7A 294 63.88 c.69.1.8 34677 1us0A 316 64.39 c.1.7.1 99850 2qxfA 482 64.53 2j6vA 301 65.97 2r91A 286 66.00 1yixA 265 66.42 c.1.9.12 123371 1qfeA 252 66.51 c.1.10.1 29167 1l6sA 323 68.51 c.1.10.3 73627 2qulA 290 68.66 2qedA 258 68.95 2f5xA 312 69.20 2fi1A 190 69.74 c.108.1.3 133508 1qh5A 260 69.81 d.157.1.2 42057 2o1eA 312 70.03 1lucA 355 70.12 c.1.16.1 29547 1ks9A 291 70.55 a.100.1.7,c.2.1.6 68857,68858 2jfuA 291 71.44 1ynpA 317 71.94 1vbjA 281 72.27 1toaA 313 74.15 c.92.2.2 35598 2cz9A 350 74.19 2ftwA 521 74.44 b.92.1.3,c.1.9.6 134083,134084 2e7fA 262 74.74 1ads 315 75.98 2oa8A 233 76.93 1qf9A 194 77.71 c.37.1.1 31848 1zzmA 259 78.03 c.1.9.12 125911 1frb 315 78.48 1zsxA 347 78.59 1mp4A 292 79.18 c.68.1.6 79376 1jlnA 297 79.76 c.45.1.2 63172 2ogwA 310 80.16 1v5xA 203 81.60 c.1.2.4 100377 2nlyA 245 81.67 c.6.2.7 138364 1csnA 298 82.71 d.144.1.7 41664 2nqlA 388 84.25 1o2dA 371 84.62 e.22.1.2 86591 2i1qA 322 85.46 a.60.4.1,c.37.1.11 136984,136985 1h5yA 253 86.91 c.1.2.1 65638 1nal1 297 87.73 1rhcA 330 88.32 c.1.16.3 97468