# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.69e-21 1m65A 245 1.29e-14 c.6.3.1 84847 2anuA 255 5.50e-11 c.6.3.1 127058 2hnhA 910 1.39e-08 2p1jA 186 0.03509 1v77A 212 0.2469 c.6.3.2 108402 1j9aA 184 0.3098 c.55.3.5 84135 1wljA 189 0.3652 c.55.3.5 114734 1ytaA 180 0.4178 c.55.3.5 124002 2ob3A 330 0.8900 2igiA 180 1.073 1w0hA 204 2.009 c.55.3.5 114064 1j53A 186 2.649 c.55.3.5 77076 1w8sA 263 3.042 c.1.10.1 120744 2qw5A 335 3.810 1o0yA 260 4.175 c.1.10.1 80756 1w1iE 357 4.359 c.1.9.1 109051 2guiA 194 4.711 c.55.3.5 135737 2gzxA 265 4.935 1jq5A 370 5.133 e.22.1.2 67084 1yx1A 264 6.095 c.1.15.7 124169 1i0dA 332 6.176 c.1.9.3 61487 1y0eA 223 6.241 c.1.2.5 116297 1j54A 186 7.014 c.55.3.5 77077 1tv8A 340 8.113 c.1.28.3 107352 1yw1A 442 8.347 c.1.16.4 124130 2d2jA 329 8.424 c.1.9.3 131175 1ojxA 263 8.478 c.1.10.1 93164 1nuuA 252 8.589 c.26.1.3 86209 2ehhA 294 8.996 3b9oA 440 9.876 3c86A 328 10.11 1hw6A 278 11.59 c.1.7.1 61296 1zuaX 317 11.60 1y97A 238 12.08 c.55.3.5 122773 2vc7A 314 13.39 2f96A 224 14.06 c.55.3.5 133153 2qahA 303 14.97 1yixA 265 15.03 c.1.9.12 123371 1ezwA 349 16.27 c.1.16.3 29558 2q02A 272 16.53 2hk0A 309 18.10 1o2dA 371 18.25 e.22.1.2 86591 1yumA 242 18.29 1fxoA 293 19.17 c.68.1.6 34524 1a4mA 349 19.24 c.1.9.1 29014 1fkx 349 19.88 2pcqA 283 19.92 2tpsA 227 20.45 c.1.3.1 28591 1zzmA 259 20.48 c.1.9.12 125911 2amxA 376 20.85 c.1.9.1 127024 1vflA 356 22.03 c.1.9.1 120041 1qtwA 285 22.25 c.1.15.1 29392 2hejA 323 23.65 1lvwA 295 23.85 c.68.1.6 84723 1qopA 268 24.09 c.1.2.4 28570 2oa8A 233 24.47 1dqsA 393 26.21 e.22.1.1 43347 2rfgA 297 26.94 1bf6A 291 28.08 c.1.9.3 29065 2i7gA 376 28.43 2f06A 144 30.16 d.58.18.11,d.58.18.11 132652,132653 1yxyA 234 31.48 c.1.2.5 124203 1o5kA 306 31.56 c.1.10.1 92504 1pszA 303 32.00 c.92.2.2 35600 1yc5A 246 32.26 c.31.1.5 122910 2ac7A 235 32.44 c.56.2.1 126543 1xwyA 264 34.02 c.1.9.12 122411 1i60A 278 34.48 c.1.15.4 71118 1rxyA 253 34.63 c.56.2.1 98065 1f6yA 262 34.96 c.1.21.2 29673 2bp1A 360 35.33 2ao0A 324 36.68 1vbjA 281 36.97 2agtA 319 37.19 1tvlA 454 37.55 c.1.16.4 107366 1s2oA 244 38.34 c.108.1.10 118846 2ojpA 292 39.13 2r91A 286 39.19 2g0wA 296 39.68 c.1.15.4 134503 2r8wA 332 40.21 2gfiA 458 40.68 2ffiA 288 42.59 c.1.9.15 133385 2ho4A 259 43.08 2yx0A 342 43.18 1zgdA 312 43.48 1korA 400 43.99 c.26.2.1,d.210.1.1 72824,72825 2ahrA 259 45.00 a.100.1.10,c.2.1.6 126775,126776 1n7kA 234 45.22 c.1.10.1 85374 2dskA 311 45.74 1l6sA 323 46.40 c.1.10.3 73627 1evyA 366 46.66 a.100.1.6,c.2.1.6 18811,30215 1ynpA 317 47.80 1qfeA 252 47.86 c.1.10.1 29167 2qulA 290 47.93 2qv5A 261 49.04 2i1qA 322 49.06 a.60.4.1,c.37.1.11 136984,136985 2uz0A 263 49.16 1qisA 396 51.05 c.67.1.1 34284 1gqnA 252 51.10 c.1.10.1 90514 1xrtA 467 51.69 b.92.1.3,c.1.9.6 122258,122259 1kq3A 376 52.21 e.22.1.2 68790 1vl2A 421 54.39 c.26.2.1,d.210.1.1 108708,108709 1mp4A 292 56.24 c.68.1.6 79376 1nal1 297 56.56 1h5yA 253 56.58 c.1.2.1 65638 1vlwA 217 56.82 c.1.10.1 108868 3ciwA 348 58.11 2dztA 248 58.22 1bn7A 294 58.72 c.69.1.8 34677 1n82A 331 58.90 c.1.8.3 91703 1pq4A 291 60.10 c.92.2.2 94995 2c1iA 431 61.46 c.6.2.3,d.341.1.1 129636,129637 1qf9A 194 61.46 c.37.1.1 31848 1snnA 227 61.73 d.115.1.2 105821 1nofA 383 62.24 b.71.1.2,c.1.8.3 92020,92021 2d59A 144 62.53 c.2.1.8 131266 1rpxA 230 64.86 c.1.2.2 28536 1ars 396 66.46 1ptvA 321 67.76 c.45.1.2 32665 1k77A 260 67.97 c.1.15.5 72096 2nlyA 245 69.06 c.6.2.7 138364 2nuwA 288 70.29 1gkpA 458 70.50 b.92.1.3,c.1.9.6 70231,70232 1vpqA 273 71.26 c.1.32.1 113974 2gokA 429 71.47 1rrmA 386 72.68 e.22.1.2 105081 2cbiA 594 72.94 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 1cozA 129 74.12 c.26.1.2 31598 2qt3A 403 74.38 1itcA 516 75.02 b.3.1.1,c.1.8.1 83705,83706 1j96A 323 75.08 c.1.7.1 71616 1vljA 407 75.09 e.22.1.2 108832 2c1gA 431 75.31 c.6.2.3,d.341.1.1 129632,129633 1g57A 217 75.99 d.115.1.2 60253 1kqnA 279 76.80 c.26.1.3 77492 2e7fA 262 78.30 1gkrA 458 78.69 b.92.1.3,c.1.9.6 70251,70252 2b81A 323 78.92 2p5iA 288 79.38 1vicA 262 80.48 c.68.1.13 100756 1mzhA 225 80.63 c.1.10.1 79698 1f07A 321 81.01 c.1.16.3 59560 2pgfA 371 81.27 1l1zA 274 82.02 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1oj7A 408 82.70 e.22.1.2 103971 1gg4A 452 85.62 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1mi3A 322 85.90 c.1.7.1 91274 1l2uA 245 85.94 c.1.2.3 73516 1rzmA 338 88.44 c.1.10.4 105137 2gdjA 264 89.38 c.37.1.11 135018