# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 4.31e-20 1m65A 245 2.33e-13 c.6.3.1 84847 2anuA 255 5.87e-10 c.6.3.1 127058 2hnhA 910 2.56e-06 2p1jA 186 0.1077 1v77A 212 0.3964 c.6.3.2 108402 1j9aA 184 0.9658 c.55.3.5 84135 1ytaA 180 1.233 c.55.3.5 124002 1wljA 189 1.496 c.55.3.5 114734 2qw5A 335 2.419 3bofA 566 2.879 2igiA 180 3.550 1w0hA 204 3.862 c.55.3.5 114064 1w8sA 263 4.076 c.1.10.1 120744 3b9oA 440 5.971 1xwyA 264 6.144 c.1.9.12 122411 1o0yA 260 6.325 c.1.10.1 80756 1ojxA 263 6.612 c.1.10.1 93164 1j53A 186 7.533 c.55.3.5 77076 1yx1A 264 8.006 c.1.15.7 124169 2gzxA 265 8.832 1tv8A 340 9.226 c.1.28.3 107352 1yaaA 412 10.45 c.67.1.1 34280 1ezwA 349 11.85 c.1.16.3 29558 1tvlA 454 12.12 c.1.16.4 107366 2ffiA 288 12.14 c.1.9.15 133385 2guiA 194 12.62 c.55.3.5 135737 1yixA 265 14.06 c.1.9.12 123371 1vflA 356 14.26 c.1.9.1 120041 1w1iE 357 14.35 c.1.9.1 109051 2vc7A 314 14.57 1dqsA 393 15.02 e.22.1.1 43347 1zuaX 317 15.11 2d2jA 329 15.43 c.1.9.3 131175 2gokA 429 16.15 2qxfA 482 16.82 1hw6A 278 16.86 c.1.7.1 61296 2f96A 224 16.90 c.55.3.5 133153 2z06A 252 17.08 1j54A 186 18.70 c.55.3.5 77077 2p9bA 458 18.73 3c86A 328 19.07 2b81A 323 19.26 1yw1A 442 19.26 c.1.16.4 124130 1i60A 278 20.36 c.1.15.4 71118 2q09A 416 21.67 1y97A 238 22.09 c.55.3.5 122773 1a4mA 349 22.39 c.1.9.1 29014 1vbjA 281 23.47 1ho1A 242 23.61 c.1.24.1 61097 2tpsA 227 23.73 c.1.3.1 28591 1gl6A 436 26.35 c.37.1.11 70259 1rxyA 253 29.20 c.56.2.1 98065 1zzmA 259 29.54 c.1.9.12 125911 2puzA 419 30.86 1zy9A 564 30.89 b.30.5.11,c.1.8.13 125813,125814 1pszA 303 31.11 c.92.2.2 35600 2i7gA 376 31.35 2az4A 429 31.55 d.157.1.10 127597 1ozhA 566 31.78 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2amxA 376 33.82 c.1.9.1 127024 2g0wA 296 33.95 c.1.15.4 134503 1fkx 349 34.27 1nrwA 288 34.48 c.108.1.10 86128 1gg4A 452 35.37 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1yumA 242 36.89 1y0eA 223 37.30 c.1.2.5 116297 1yxyA 234 37.38 c.1.2.5 124203 2j6vA 301 37.39 1nqkA 381 37.86 c.1.16.4 92050 2hejA 323 38.54 1yb2A 275 40.66 c.66.1.13 122868 1s2oA 244 40.84 c.108.1.10 118846 1gkpA 458 41.98 b.92.1.3,c.1.9.6 70231,70232 3c8nA 356 42.38 1qfeA 252 43.05 c.1.10.1 29167 1qopA 268 44.37 c.1.2.4 28570 1gqnA 252 44.74 c.1.10.1 90514 1korA 400 45.25 c.26.2.1,d.210.1.1 72824,72825 2q02A 272 45.37 2r8wA 332 45.75 1bqcA 302 45.92 c.1.8.3 28831 2ao0A 324 46.11 1lvwA 295 46.74 c.68.1.6 84723 1p1mA 406 47.14 b.92.1.4,c.1.9.9 87696,87697 3xis 387 48.25 1o5kA 306 48.55 c.1.10.1 92504 2ehhA 294 48.60 2ojpA 292 49.14 1g0uD 241 49.93 d.153.1.4 41949 2qulA 290 50.62 2ahrA 259 52.42 a.100.1.10,c.2.1.6 126775,126776 2ho4A 259 53.30 2ac7A 235 55.31 c.56.2.1 126543 2cfuA 658 56.61 1fobA 334 57.42 c.1.8.3 83255 1h5yA 253 60.16 c.1.2.1 65638 1kq3A 376 60.46 e.22.1.2 68790 2i1qA 322 61.09 a.60.4.1,c.37.1.11 136984,136985 1bf6A 291 61.18 c.1.9.3 29065 2dejA 350 61.35 2hfsA 332 61.92 1m5wA 243 62.25 c.1.24.1 84836 2c1iA 431 62.87 c.6.2.3,d.341.1.1 129636,129637 2g3fA 421 63.34 1f6yA 262 64.00 c.1.21.2 29673 2uz0A 263 65.02 1yqeA 282 65.10 c.56.7.1 123879 1n7kA 234 65.72 c.1.10.1 85374 2oa8A 233 65.78 2r91A 286 67.57 1rzmA 338 67.63 c.1.10.4 105137 1f07A 321 69.14 c.1.16.3 59560 2d59A 144 69.88 c.2.1.8 131266 1bn7A 294 70.22 c.69.1.8 34677 1l2uA 245 70.56 c.1.2.3 73516 2qv5A 261 70.74 1rrmA 386 72.36 e.22.1.2 105081 2citA 282 72.61 c.1.8.3 130499 2gdjA 264 72.90 c.37.1.11 135018 1fxxA 482 75.14 c.55.3.5 33726 1pq4A 291 75.18 c.92.2.2 94995 1vr5A 547 75.35 c.94.1.1 120437 1itcA 516 75.45 b.3.1.1,c.1.8.1 83705,83706 1jx6A 342 76.93 c.93.1.1 67406 3ciwA 348 77.06 1ptvA 321 77.13 c.45.1.2 32665 1vlwA 217 77.44 c.1.10.1 108868 1q7zA 566 77.85 c.1.21.2,c.1.26.1 96090,96091 1k6wA 426 79.07 b.92.1.2,c.1.9.5 68236,68237 1yc5A 246 80.42 c.31.1.5 122910 1qf9A 194 80.49 c.37.1.1 31848 1xahA 354 80.76 1rpxA 230 81.23 c.1.2.2 28536 2hbvA 334 81.94 c.1.9.15 136320 1zsxA 347 82.72 1oj7A 408 83.91 e.22.1.2 103971 1vl2A 421 84.26 c.26.2.1,d.210.1.1 108708,108709 1j96A 323 85.60 c.1.7.1 71616 1vpqA 273 86.45 c.1.32.1 113974 1huxA 270 86.55 c.55.1.5 61278 1csnA 298 86.63 d.144.1.7 41664 3cu2A 237 86.91 1ur5A 309 87.04 c.2.1.5,d.162.1.1 99807,99808 1j6oA 268 88.10 c.1.9.12 77088 3ce9A 354 88.59 1ur1A 378 89.28 c.1.8.3 99804 1qisA 396 89.78 c.67.1.1 34284