# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.51e-20 1m65A 245 4.52e-14 c.6.3.1 84847 2anuA 255 1.21e-10 c.6.3.1 127058 2hnhA 910 4.26e-08 2p1jA 186 0.04291 1v77A 212 0.2826 c.6.3.2 108402 1j9aA 184 0.3530 c.55.3.5 84135 2ob3A 330 0.5045 1ytaA 180 0.5370 c.55.3.5 124002 1wljA 189 0.5923 c.55.3.5 114734 2igiA 180 1.262 1w0hA 204 2.012 c.55.3.5 114064 1i0dA 332 2.934 c.1.9.3 61487 1o0yA 260 3.052 c.1.10.1 80756 1w8sA 263 3.116 c.1.10.1 120744 1j53A 186 3.132 c.55.3.5 77076 2d2jA 329 4.087 c.1.9.3 131175 2qw5A 335 4.967 2guiA 194 5.296 c.55.3.5 135737 3c86A 328 5.459 1y0eA 223 6.062 c.1.2.5 116297 2gzxA 265 6.773 1yx1A 264 6.909 c.1.15.7 124169 1jq5A 370 7.452 e.22.1.2 67084 1j54A 186 7.478 c.55.3.5 77077 1ojxA 263 8.532 c.1.10.1 93164 2vc7A 314 9.402 1w1iE 357 9.475 c.1.9.1 109051 1tv8A 340 10.50 c.1.28.3 107352 1zuaX 317 10.84 3b9oA 440 11.32 1yw1A 442 11.66 c.1.16.4 124130 2ehhA 294 12.23 1nuuA 252 12.28 c.26.1.3 86209 1y97A 238 12.63 c.55.3.5 122773 1ezwA 349 14.42 c.1.16.3 29558 1o2dA 371 15.26 e.22.1.2 86591 1hw6A 278 15.68 c.1.7.1 61296 1vflA 356 16.30 c.1.9.1 120041 2f96A 224 16.71 c.55.3.5 133153 1dqsA 393 17.99 e.22.1.1 43347 1fxoA 293 18.04 c.68.1.6 34524 2q02A 272 18.12 2qahA 303 19.23 1zzmA 259 20.10 c.1.9.12 125911 1a4mA 349 20.95 c.1.9.1 29014 2i7gA 376 21.01 1yixA 265 25.37 c.1.9.12 123371 2pcqA 283 26.54 2tpsA 227 27.14 c.1.3.1 28591 2hk0A 309 27.62 1qopA 268 28.24 c.1.2.4 28570 2oa8A 233 30.10 2hejA 323 30.16 1fkx 349 30.31 1qisA 396 30.54 c.67.1.1 34284 2dskA 311 30.89 1lvwA 295 31.10 c.68.1.6 84723 1qtwA 285 31.17 c.1.15.1 29392 2ac7A 235 31.35 c.56.2.1 126543 1s2oA 244 32.13 c.108.1.10 118846 1yumA 242 32.66 1rxyA 253 32.74 c.56.2.1 98065 2ho4A 259 32.95 1i60A 278 33.54 c.1.15.4 71118 1yxyA 234 33.93 c.1.2.5 124203 1pszA 303 34.11 c.92.2.2 35600 2amxA 376 34.17 c.1.9.1 127024 1xwyA 264 34.32 c.1.9.12 122411 1f6yA 262 35.55 c.1.21.2 29673 2ffiA 288 36.25 c.1.9.15 133385 1l6sA 323 37.48 c.1.10.3 73627 2ao0A 324 37.66 2agtA 319 37.76 2rfgA 297 37.83 1tvlA 454 41.00 c.1.16.4 107366 2ahrA 259 42.07 a.100.1.10,c.2.1.6 126775,126776 2gfiA 458 43.59 2i1qA 322 44.01 a.60.4.1,c.37.1.11 136984,136985 1ptvA 321 45.05 c.45.1.2 32665 1ars 396 45.67 1bf6A 291 46.00 c.1.9.3 29065 1vbjA 281 46.18 1qfeA 252 46.42 c.1.10.1 29167 1gqnA 252 46.54 c.1.10.1 90514 1o5kA 306 47.99 c.1.10.1 92504 2c1gA 431 48.56 c.6.2.3,d.341.1.1 129632,129633 1yc5A 246 48.76 c.31.1.5 122910 2ojpA 292 49.10 2g0wA 296 49.28 c.1.15.4 134503 2c1iA 431 49.29 c.6.2.3,d.341.1.1 129636,129637 1korA 400 49.35 c.26.2.1,d.210.1.1 72824,72825 2uz0A 263 49.40 1gkpA 458 50.37 b.92.1.3,c.1.9.6 70231,70232 1n82A 331 51.77 c.1.8.3 91703 2qv5A 261 54.31 2r91A 286 55.16 1evyA 366 55.37 a.100.1.6,c.2.1.6 18811,30215 1h5yA 253 55.56 c.1.2.1 65638 1n7kA 234 56.84 c.1.10.1 85374 2qulA 290 57.01 2r8wA 332 57.82 2bp1A 360 58.91 1gkrA 458 58.95 b.92.1.3,c.1.9.6 70251,70252 1zgdA 312 59.18 2e7fA 262 59.98 1nofA 383 63.81 b.71.1.2,c.1.8.3 92020,92021 1pq4A 291 64.54 c.92.2.2 94995 1gg4A 452 64.69 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1bn7A 294 66.04 c.69.1.8 34677 2d59A 144 66.83 c.2.1.8 131266 1qf9A 194 68.27 c.37.1.1 31848 1xrtA 467 68.98 b.92.1.3,c.1.9.6 122258,122259 2yx0A 342 69.02 1nrwA 288 69.74 c.108.1.10 86128 2z06A 252 71.31 2pgfA 371 71.39 1k77A 260 71.48 c.1.15.5 72096 2nuwA 288 71.54 2b81A 323 71.56 2dztA 248 72.59 1kq3A 376 73.14 e.22.1.2 68790 3cu2A 237 73.35 1vl2A 421 75.28 c.26.2.1,d.210.1.1 108708,108709 2dejA 350 75.45 2qgzA 308 76.07 1vlwA 217 76.27 c.1.10.1 108868 2f06A 144 76.69 d.58.18.11,d.58.18.11 132652,132653 2nlyA 245 76.90 c.6.2.7 138364 1g57A 217 76.98 d.115.1.2 60253 1lucB 324 77.14 c.1.16.1 29548 1ynpA 317 77.25 1rpxA 230 78.06 c.1.2.2 28536 1oj7A 408 78.42 e.22.1.2 103971 1mi3A 322 78.43 c.1.7.1 91274 3ciwA 348 79.82 1nal1 297 81.10 1rzmA 338 82.04 c.1.10.4 105137 1kq6A 141 83.40 d.189.1.1 91020 1l2uA 245 84.78 c.1.2.3 73516 1gzgA 337 86.06 c.1.10.3 70805 1itcA 516 87.30 b.3.1.1,c.1.8.1 83705,83706 2rbkA 261 89.53 1vpqA 273 89.55 c.1.32.1 113974