# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.91e-24 1m65A 245 1.41e-16 c.6.3.1 84847 2anuA 255 2.05e-13 c.6.3.1 127058 2hnhA 910 8.80e-10 2p1jA 186 0.002638 1j9aA 184 0.04400 c.55.3.5 84135 1ytaA 180 0.1617 c.55.3.5 124002 1w0hA 204 0.1691 c.55.3.5 114064 1wljA 189 0.2234 c.55.3.5 114734 2igiA 180 0.2240 1v77A 212 0.4403 c.6.3.2 108402 1j53A 186 0.6428 c.55.3.5 77076 2ob3A 330 0.9316 2guiA 194 1.215 c.55.3.5 135737 2qw5A 335 1.466 1w1iE 357 1.870 c.1.9.1 109051 1w8sA 263 2.045 c.1.10.1 120744 1j54A 186 2.705 c.55.3.5 77077 1i0dA 332 2.710 c.1.9.3 61487 1jq5A 370 2.941 e.22.1.2 67084 2f96A 224 4.148 c.55.3.5 133153 1y97A 238 4.859 c.55.3.5 122773 1o0yA 260 5.346 c.1.10.1 80756 1o2dA 371 5.680 e.22.1.2 86591 1yx1A 264 6.760 c.1.15.7 124169 1zuaX 317 7.161 3b9oA 440 8.067 2gzxA 265 8.598 1ojxA 263 9.112 c.1.10.1 93164 3c86A 328 9.241 2i7gA 376 9.487 2hk0A 309 9.587 1ezwA 349 9.99 c.1.16.3 29558 1yw1A 442 10.05 c.1.16.4 124130 2qahA 303 10.60 1y0eA 223 10.84 c.1.2.5 116297 2gfiA 458 11.75 1rxyA 253 14.39 c.56.2.1 98065 1nuuA 252 14.77 c.26.1.3 86209 1dqsA 393 15.23 e.22.1.1 43347 1pszA 303 16.35 c.92.2.2 35600 1lvwA 295 16.37 c.68.1.6 84723 1oj4A 283 17.64 d.14.1.5,d.58.26.5 93083,93084 1fkx 349 20.26 1a4mA 349 20.36 c.1.9.1 29014 1yumA 242 20.36 2agtA 319 20.47 2dskA 311 22.59 2ac7A 235 24.31 c.56.2.1 126543 1kq3A 376 24.41 e.22.1.2 68790 2yx0A 342 24.53 1vljA 407 24.86 e.22.1.2 108832 1tvlA 454 25.35 c.1.16.4 107366 1ars 396 25.74 2gokA 429 25.98 1korA 400 26.19 c.26.2.1,d.210.1.1 72824,72825 1fxoA 293 28.62 c.68.1.6 34524 1fi4A 416 31.40 d.14.1.5,d.58.26.2 59847,59848 1xahA 354 31.95 2ehhA 294 32.04 3cjpA 272 32.33 2d2jA 329 32.55 c.1.9.3 131175 1gg4A 452 35.84 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1k77A 260 36.95 c.1.15.5 72096 1l6sA 323 37.09 c.1.10.3 73627 2hejA 323 37.67 1bf6A 291 40.04 c.1.9.3 29065 1tv8A 340 40.70 c.1.28.3 107352 2fbyA 205 41.21 2bp1A 360 41.38 1i60A 278 42.31 c.1.15.4 71118 1rrmA 386 42.94 e.22.1.2 105081 2cbiA 594 43.92 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 1qtwA 285 45.14 c.1.15.1 29392 2p5iA 288 47.51 1oj7A 408 48.53 e.22.1.2 103971 1gkpA 458 48.97 b.92.1.3,c.1.9.6 70231,70232 2amxA 376 49.54 c.1.9.1 127024 1d5rA 324 50.30 b.7.1.1,c.45.1.1 23181,32697 1a0dA 440 50.81 c.1.15.3 29533 2q02A 272 50.96 2g0wA 296 51.18 c.1.15.4 134503 2c1gA 431 51.42 c.6.2.3,d.341.1.1 129632,129633 2c1iA 431 54.87 c.6.2.3,d.341.1.1 129636,129637 2uz0A 263 55.36 1k47A 337 55.40 d.14.1.5,d.58.26.4 72040,72041 1lucB 324 56.88 c.1.16.1 29548 1rzmA 338 57.55 c.1.10.4 105137 1s2oA 244 58.28 c.108.1.10 118846 1yb2A 275 58.34 c.66.1.13 122868 2qxfA 482 58.61 1g57A 217 58.86 d.115.1.2 60253 3cnyA 301 59.54 2oa8A 233 61.80 1qh5A 260 64.13 d.157.1.2 42057 1qisA 396 65.42 c.67.1.1 34284 2vc7A 314 65.43 2v3zA 440 67.03 2ahrA 259 67.10 a.100.1.10,c.2.1.6 126775,126776 1vflA 356 67.46 c.1.9.1 120041 2ftwA 521 67.56 b.92.1.3,c.1.9.6 134083,134084 2pcqA 283 68.45 1jx6A 342 72.31 c.93.1.1 67406 1qopA 268 72.52 c.1.2.4 28570 1kkhA 317 73.42 d.14.1.5,d.58.26.3 72645,72646 1k92A 455 74.09 c.26.2.1,d.210.1.1 68325,68326 1pq4A 291 74.12 c.92.2.2 94995 1frb 315 74.62 2z06A 252 76.16 1lucA 355 76.64 c.1.16.1 29547 1cozA 129 77.91 c.26.1.2 31598 1o12A 376 78.22 b.92.1.5,c.1.9.10 80758,80759 1gkrA 458 79.48 b.92.1.3,c.1.9.6 70251,70252 1j96A 323 79.64 c.1.7.1 71616 1itcA 516 80.71 b.3.1.1,c.1.8.1 83705,83706 2i57A 438 81.22 2rfgA 297 81.60 2ho4A 259 81.97 1ptvA 321 83.00 c.45.1.2 32665 1tx4B 178 83.63 c.37.1.8 32045 2qpxA 376 83.63 1csnA 298 83.85 d.144.1.7 41664 1hw6A 278 85.12 c.1.7.1 61296 1bn7A 294 87.25 c.69.1.8 34677 1mp4A 292 87.60 c.68.1.6 79376 1ede 310 87.76 3ce9A 354 88.04 2hkeA 380 88.45 2v5jA 287 89.93