# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.85e-23 1m65A 245 4.81e-16 c.6.3.1 84847 2anuA 255 5.86e-13 c.6.3.1 127058 2hnhA 910 4.41e-10 2p1jA 186 0.01124 1j9aA 184 0.1184 c.55.3.5 84135 1ytaA 180 0.2550 c.55.3.5 124002 1wljA 189 0.2830 c.55.3.5 114734 1v77A 212 0.3283 c.6.3.2 108402 2ob3A 330 0.3696 2igiA 180 0.5297 1w0hA 204 0.8455 c.55.3.5 114064 1w1iE 357 1.254 c.1.9.1 109051 1w8sA 263 1.425 c.1.10.1 120744 2qw5A 335 1.479 1i0dA 332 1.642 c.1.9.3 61487 1j53A 186 1.931 c.55.3.5 77076 2guiA 194 3.402 c.55.3.5 135737 1o0yA 260 3.785 c.1.10.1 80756 1jq5A 370 3.845 e.22.1.2 67084 1zuaX 317 5.434 2f96A 224 5.873 c.55.3.5 133153 2i7gA 376 6.023 3c86A 328 6.151 1fkx 349 6.185 1yx1A 264 6.244 c.1.15.7 124169 1j54A 186 6.284 c.55.3.5 77077 2agtA 319 6.452 1y0eA 223 6.647 c.1.2.5 116297 2gzxA 265 7.763 2d2jA 329 8.217 c.1.9.3 131175 1y97A 238 8.562 c.55.3.5 122773 1o2dA 371 8.574 e.22.1.2 86591 1yw1A 442 9.108 c.1.16.4 124130 1ojxA 263 9.169 c.1.10.1 93164 1ezwA 349 9.273 c.1.16.3 29558 3b9oA 440 9.527 1a4mA 349 10.32 c.1.9.1 29014 1l6sA 323 13.21 c.1.10.3 73627 1pszA 303 16.84 c.92.2.2 35600 2vc7A 314 17.73 1bf6A 291 18.33 c.1.9.3 29065 1ars 396 18.59 1vljA 407 19.16 e.22.1.2 108832 2hk0A 309 19.23 1qisA 396 20.50 c.67.1.1 34284 2gfiA 458 21.11 2yx0A 342 21.38 2hejA 323 21.50 1i60A 278 21.90 c.1.15.4 71118 1korA 400 22.18 c.26.2.1,d.210.1.1 72824,72825 2ehhA 294 22.78 2uz0A 263 22.88 1nuuA 252 23.24 c.26.1.3 86209 1qtwA 285 23.33 c.1.15.1 29392 1gkrA 458 23.35 b.92.1.3,c.1.9.6 70251,70252 2qahA 303 24.11 1hw6A 278 24.23 c.1.7.1 61296 1gg4A 452 25.06 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1tv8A 340 25.17 c.1.28.3 107352 2ao0A 324 26.47 1rxyA 253 26.72 c.56.2.1 98065 3cjpA 272 30.04 1a0dA 440 30.67 c.1.15.3 29533 1tvlA 454 31.65 c.1.16.4 107366 2ac7A 235 32.31 c.56.2.1 126543 1rrmA 386 32.38 e.22.1.2 105081 1yumA 242 33.50 2j6vA 301 33.68 1lvwA 295 33.85 c.68.1.6 84723 1kq3A 376 34.69 e.22.1.2 68790 2bp1A 360 36.27 2pcqA 283 36.69 1qf9A 194 38.87 c.37.1.1 31848 1fxoA 293 40.02 c.68.1.6 34524 1lucA 355 40.25 c.1.16.1 29547 1dqsA 393 41.40 e.22.1.1 43347 2ho4A 259 42.12 1oj4A 283 43.53 d.14.1.5,d.58.26.5 93083,93084 1k77A 260 44.63 c.1.15.5 72096 1qopA 268 44.95 c.1.2.4 28570 1n82A 331 45.30 c.1.8.3 91703 2dskA 311 47.24 1vflA 356 48.58 c.1.9.1 120041 2o1eA 312 48.83 2g0wA 296 50.49 c.1.15.4 134503 1s2oA 244 50.78 c.108.1.10 118846 1gzgA 337 51.45 c.1.10.3 70805 2cbiA 594 52.06 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2obiA 183 52.17 1frb 315 52.92 2p5iA 288 53.52 2q02A 272 53.54 2gokA 429 54.27 2i1qA 322 56.87 a.60.4.1,c.37.1.11 136984,136985 1gqnA 252 57.28 c.1.10.1 90514 1xwyA 264 57.81 c.1.9.12 122411 1pq4A 291 58.03 c.92.2.2 94995 1vbjA 281 58.39 1j96A 323 58.60 c.1.7.1 71616 1zgdA 312 59.74 1f07A 321 59.83 c.1.16.3 59560 1fi4A 416 62.18 d.14.1.5,d.58.26.2 59847,59848 1vlwA 217 62.38 c.1.10.1 108868 1jlnA 297 62.58 c.45.1.2 63172 2tpsA 227 62.65 c.1.3.1 28591 1qfeA 252 62.82 c.1.10.1 29167 2rfgA 297 62.84 1xvlA 321 64.38 c.92.2.2 122380 1zsxA 347 64.64 3c8nA 356 64.74 2jfuA 291 64.78 2qgzA 308 65.31 2ahrA 259 65.55 a.100.1.10,c.2.1.6 126775,126776 2d59A 144 65.70 c.2.1.8 131266 3cnyA 301 66.10 1lucB 324 66.52 c.1.16.1 29548 1n7kA 234 66.79 c.1.10.1 85374 1oj7A 408 66.99 e.22.1.2 103971 1gkpA 458 68.05 b.92.1.3,c.1.9.6 70231,70232 2amxA 376 68.08 c.1.9.1 127024 1yixA 265 69.15 c.1.9.12 123371 1ynpA 317 69.19 1vl2A 421 70.00 c.26.2.1,d.210.1.1 108708,108709 1nqkA 381 73.47 c.1.16.4 92050 1o98A 511 73.78 c.105.1.1,c.76.1.3 86684,86685 2f4dA 184 74.02 1ptvA 321 74.13 c.45.1.2 32665 1ads 315 75.19 3ciwA 348 75.54 1cozA 129 76.08 c.26.1.2 31598 1xp3A 307 77.23 c.1.15.1 122210 1h5yA 253 78.70 c.1.2.1 65638 1yxyA 234 78.85 c.1.2.5 124203 1v5xA 203 79.93 c.1.2.4 100377 3xis 387 81.71 2ftwA 521 82.09 b.92.1.3,c.1.9.6 134083,134084 1gveA 327 82.27 c.1.7.1 70597 3chvA 284 82.36 1f6yA 262 83.44 c.1.21.2 29673 2oa8A 233 84.26 2qpxA 376 86.68 3cu2A 237 86.72 1zzmA 259 87.27 c.1.9.12 125911 1aszB 490 87.40 b.40.4.1,d.104.1.1 25241,40762 1itcA 516 87.67 b.3.1.1,c.1.8.1 83705,83706 2pgfA 371 87.95 1yb2A 275 88.51 c.66.1.13 122868 2ffiA 288 88.65 c.1.9.15 133385 1us0A 316 88.87 c.1.7.1 99850 1bn7A 294 89.08 c.69.1.8 34677 1qwkA 317 89.44 c.1.7.1 96482