# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.08e-23 1m65A 245 3.19e-16 c.6.3.1 84847 2anuA 255 5.45e-13 c.6.3.1 127058 2hnhA 910 1.48e-09 2p1jA 186 0.007491 1j9aA 184 0.1100 c.55.3.5 84135 1ytaA 180 0.2118 c.55.3.5 124002 1wljA 189 0.2619 c.55.3.5 114734 1v77A 212 0.2769 c.6.3.2 108402 2ob3A 330 0.3571 2igiA 180 0.4771 1w0hA 204 1.135 c.55.3.5 114064 1j53A 186 1.169 c.55.3.5 77076 1w1iE 357 1.375 c.1.9.1 109051 1i0dA 332 1.647 c.1.9.3 61487 2guiA 194 1.706 c.55.3.5 135737 1w8sA 263 2.513 c.1.10.1 120744 2qw5A 335 3.072 1j54A 186 3.310 c.55.3.5 77077 1yx1A 264 3.695 c.1.15.7 124169 1o0yA 260 3.990 c.1.10.1 80756 2f96A 224 4.225 c.55.3.5 133153 1jq5A 370 5.262 e.22.1.2 67084 2i7gA 376 5.345 1y97A 238 6.656 c.55.3.5 122773 3c86A 328 7.316 1ojxA 263 7.928 c.1.10.1 93164 2agtA 319 8.276 1zuaX 317 8.385 1fkx 349 8.401 2d2jA 329 8.472 c.1.9.3 131175 1yw1A 442 8.862 c.1.16.4 124130 1y0eA 223 9.571 c.1.2.5 116297 3b9oA 440 9.812 2gzxA 265 10.36 1ezwA 349 10.46 c.1.16.3 29558 1o2dA 371 10.69 e.22.1.2 86591 1nuuA 252 13.38 c.26.1.3 86209 1ars 396 13.79 1pszA 303 14.05 c.92.2.2 35600 1korA 400 14.30 c.26.2.1,d.210.1.1 72824,72825 1a4mA 349 14.51 c.1.9.1 29014 2ehhA 294 14.64 2uz0A 263 16.50 1bf6A 291 16.73 c.1.9.3 29065 1dqsA 393 17.35 e.22.1.1 43347 1qisA 396 17.47 c.67.1.1 34284 2vc7A 314 17.50 2qahA 303 19.08 1fxoA 293 19.31 c.68.1.6 34524 1hw6A 278 20.05 c.1.7.1 61296 1yumA 242 20.23 1gg4A 452 21.88 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1rxyA 253 22.13 c.56.2.1 98065 1lvwA 295 23.14 c.68.1.6 84723 1tvlA 454 23.55 c.1.16.4 107366 1l6sA 323 24.13 c.1.10.3 73627 2hk0A 309 26.28 1qtwA 285 26.75 c.1.15.1 29392 2ho4A 259 26.79 3cjpA 272 27.76 2gfiA 458 29.14 2hejA 323 29.68 1i60A 278 31.26 c.1.15.4 71118 1tv8A 340 32.05 c.1.28.3 107352 2ac7A 235 32.11 c.56.2.1 126543 2gokA 429 32.82 1rrmA 386 33.87 e.22.1.2 105081 1vl2A 421 34.07 c.26.2.1,d.210.1.1 108708,108709 2tpsA 227 36.41 c.1.3.1 28591 2q02A 272 37.17 2z06A 252 39.18 1lucB 324 41.05 c.1.16.1 29548 2g0wA 296 41.83 c.1.15.4 134503 2bp1A 360 42.27 1k77A 260 42.75 c.1.15.5 72096 1vljA 407 43.08 e.22.1.2 108832 1frb 315 43.80 1yb2A 275 44.67 c.66.1.13 122868 2i1qA 322 45.08 a.60.4.1,c.37.1.11 136984,136985 2cbiA 594 45.48 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2dskA 311 46.21 1pq4A 291 46.73 c.92.2.2 94995 2rfgA 297 46.90 1kq3A 376 47.34 e.22.1.2 68790 2ahrA 259 47.68 a.100.1.10,c.2.1.6 126775,126776 2yx0A 342 47.88 1vflA 356 49.80 c.1.9.1 120041 1s2oA 244 50.69 c.108.1.10 118846 2oa8A 233 50.84 1qfeA 252 50.91 c.1.10.1 29167 3xis 387 50.99 1oj7A 408 51.04 e.22.1.2 103971 2d59A 144 52.33 c.2.1.8 131266 1itcA 516 52.50 b.3.1.1,c.1.8.1 83705,83706 1n82A 331 52.63 c.1.8.3 91703 2pcqA 283 52.99 1yc5A 246 53.28 c.31.1.5 122910 2obiA 183 55.10 1gqnA 252 55.20 c.1.10.1 90514 1gkrA 458 55.66 b.92.1.3,c.1.9.6 70251,70252 3cnyA 301 56.75 1qf9A 194 56.76 c.37.1.1 31848 1gkpA 458 56.97 b.92.1.3,c.1.9.6 70231,70232 1xvlA 321 58.13 c.92.2.2 122380 1evyA 366 59.54 a.100.1.6,c.2.1.6 18811,30215 1qopA 268 61.31 c.1.2.4 28570 1a0dA 440 62.36 c.1.15.3 29533 2ffiA 288 62.38 c.1.9.15 133385 1vlwA 217 62.55 c.1.10.1 108868 1zccA 248 64.90 c.1.18.3 124903 1ads 315 64.95 1lucA 355 66.28 c.1.16.1 29547 2hfsA 332 68.55 1n7kA 234 69.16 c.1.10.1 85374 2dejA 350 69.76 1nofA 383 70.27 b.71.1.2,c.1.8.3 92020,92021 2qulA 290 71.16 1k47A 337 71.30 d.14.1.5,d.58.26.4 72040,72041 1ahxA 396 71.77 c.67.1.1 34293 1jlnA 297 72.41 c.45.1.2 63172 1h5yA 253 73.04 c.1.2.1 65638 1zgdA 312 73.35 2pgfA 371 76.03 2amxA 376 76.42 c.1.9.1 127024 1wd7A 261 77.19 c.113.1.1 114526 1mzhA 225 77.38 c.1.10.1 79698 1xwyA 264 78.74 c.1.9.12 122411 3chvA 284 79.18 1j96A 323 79.25 c.1.7.1 71616 1nrwA 288 79.72 c.108.1.10 86128 2v3zA 440 80.42 2qxfA 482 81.21 1rzmA 338 81.60 c.1.10.4 105137 2c1gA 431 82.17 c.6.2.3,d.341.1.1 129632,129633 1us0A 316 82.28 c.1.7.1 99850 1o5kA 306 82.44 c.1.10.1 92504 2ojpA 292 83.15 1xahA 354 83.83 1z15A 344 84.14 2ftwA 521 84.49 b.92.1.3,c.1.9.6 134083,134084 1k92A 455 84.65 c.26.2.1,d.210.1.1 68325,68326 1o98A 511 85.06 c.105.1.1,c.76.1.3 86684,86685 1oj4A 283 86.04 d.14.1.5,d.58.26.5 93083,93084 1mp4A 292 86.87 c.68.1.6 79376 1ynpA 317 88.02 2f4dA 184 88.29 1gzgA 337 89.87 c.1.10.3 70805