# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.38e-19 1m65A 245 2.99e-13 c.6.3.1 84847 2anuA 255 1.23e-09 c.6.3.1 127058 2hnhA 910 2.28e-06 1v77A 212 0.05210 c.6.3.2 108402 2p1jA 186 0.5869 1ytaA 180 1.744 c.55.3.5 124002 2gzxA 265 2.527 1w1iE 357 3.047 c.1.9.1 109051 2qahA 303 3.408 1j9aA 184 3.451 c.55.3.5 84135 2amxA 376 3.734 c.1.9.1 127024 2ob3A 330 3.860 1yx1A 264 4.358 c.1.15.7 124169 2qw5A 335 4.487 1fkx 349 5.760 1vflA 356 6.488 c.1.9.1 120041 2vc7A 314 6.761 1y0eA 223 7.484 c.1.2.5 116297 1o0yA 260 7.949 c.1.10.1 80756 1xyzA 347 8.326 c.1.8.3 28804 1j53A 186 8.453 c.55.3.5 77076 3c86A 328 8.981 2guiA 194 9.229 c.55.3.5 135737 1w8sA 263 9.677 c.1.10.1 120744 1h5yA 253 9.719 c.1.2.1 65638 1wljA 189 10.18 c.55.3.5 114734 1n82A 331 10.19 c.1.8.3 91703 3cnyA 301 10.22 1n7kA 234 10.36 c.1.10.1 85374 2igiA 180 10.71 2c4nA 250 11.15 c.108.1.14 129837 1uozA 315 12.47 c.6.1.1 113354 1ojxA 263 12.60 c.1.10.1 93164 1i60A 278 12.89 c.1.15.4 71118 2bp1A 360 13.12 2hk0A 309 14.04 1j54A 186 14.12 c.55.3.5 77077 1rmwA 212 14.36 2ffiA 288 14.46 c.1.9.15 133385 1xp3A 307 14.67 c.1.15.1 122210 3cjpA 272 15.72 2d2jA 329 17.81 c.1.9.3 131175 1yixA 265 18.83 c.1.9.12 123371 2a0nA 265 19.98 c.1.2.1 125961 2ho4A 259 20.25 2q02A 272 20.87 1qtwA 285 20.93 c.1.15.1 29392 1yc5A 246 21.25 c.31.1.5 122910 1s2oA 244 21.59 c.108.1.10 118846 1k77A 260 21.71 c.1.15.5 72096 2hejA 323 22.05 1yxyA 234 23.39 c.1.2.5 124203 1a4mA 349 23.99 c.1.9.1 29014 1v0lA 313 24.20 c.1.8.3 108207 1zuaX 317 24.50 1ta3B 303 25.67 c.1.8.3 106732 2depA 356 25.96 1i1wA 303 26.56 c.1.8.3 76732 1frb 315 26.86 1vh7A 265 27.08 c.1.2.1 100646 2f96A 224 27.14 c.55.3.5 133153 1kvkA 395 27.17 d.14.1.5,d.58.26.3 73060,73061 2q8xA 331 27.59 1fh9A 312 27.66 c.1.8.3 28913 1v5xA 203 28.36 c.1.2.4 100377 2qt3A 403 28.51 2pgfA 371 29.08 1gveA 327 29.85 c.1.7.1 70597 2ffcA 353 29.96 c.1.2.3 133378 2agtA 319 31.43 1nq6A 302 31.95 c.1.8.3 92046 1qo2A 241 31.97 c.1.2.1 28533 2gokA 429 32.78 2qulA 290 33.96 1vbuA 328 34.68 c.1.8.3 119963 1r85A 379 35.47 c.1.8.3 104839 1ajsA 412 35.57 c.67.1.1 34276 1bf6A 291 35.67 c.1.9.3 29065 1thfD 253 37.04 c.1.2.1 28535 2hy1A 280 37.53 1tx2A 297 37.55 c.1.21.1 107420 2cbiA 594 38.97 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 1fobA 334 39.58 c.1.8.3 83255 1i0dA 332 41.45 c.1.9.3 61487 1zzmA 259 42.69 c.1.9.12 125911 1x92A 199 42.95 c.80.1.3 114976 2dskA 311 43.32 2f6kA 307 43.77 c.1.9.15 133047 2j4jA 226 47.39 1vhrA 184 47.52 c.45.1.1 32651 1f6yA 262 47.53 c.1.21.2 29673 2egzA 219 47.81 2yvaA 196 48.37 1j6oA 268 48.95 c.1.9.12 77088 1tk9A 188 49.59 c.80.1.3 107082 1qqp2 218 49.65 2yx0A 342 50.74 1hw6A 278 51.32 c.1.7.1 61296 1uok 558 51.43 2nxfA 322 51.74 1gkpA 458 52.26 b.92.1.3,c.1.9.6 70231,70232 1mzhA 225 52.39 c.1.10.1 79698 1nytA 271 52.93 c.2.1.7,c.58.1.5 86417,86418 1rxyA 253 53.63 c.56.2.1 98065 1lqaA 346 56.29 c.1.7.1 84674 2ogyA 262 57.49 1w32A 348 57.80 c.1.8.3 114120 1xzoA 174 58.14 c.47.1.10 122474 2yvdA 431 58.61 2d59A 144 59.15 c.2.1.8 131266 2cygA 312 59.68 c.1.8.3 131025 1xwyA 264 59.83 c.1.9.12 122411 2dorA 311 59.94 c.1.4.1 28593 2dh2A 424 60.86 2yvtA 260 61.00 3c6kA 381 62.09 1ra0A 430 62.31 b.92.1.2,c.1.9.5 111756,111757 2g0wA 296 62.63 c.1.15.4 134503 1vcvA 226 63.34 c.1.10.1 119988 2f4dA 184 63.38 1vkhA 273 65.88 c.69.1.32 108662 1zgdA 312 66.88 1dorA 311 67.05 c.1.4.1 28595 2i8aA 252 67.45 1ur1A 378 68.24 c.1.8.3 99804 1vp8A 201 68.35 c.49.1.2 113947 2z06A 252 69.07 1l6sA 323 70.95 c.1.10.3 73627 1tml 286 71.79 2c1iA 431 73.29 c.6.2.3,d.341.1.1 129636,129637 1k47A 337 73.95 d.14.1.5,d.58.26.4 72040,72041 1yaaA 412 73.99 c.67.1.1 34280 1w0hA 204 75.03 c.55.3.5 114064 2o3hA 285 75.52 2omkA 231 75.62 2i2wA 212 76.19 2cstA 411 76.33 c.67.1.1 34273 1itcA 516 76.48 b.3.1.1,c.1.8.1 83705,83706 1rzmA 338 76.76 c.1.10.4 105137 2j6vA 301 77.00 1v2dA 381 77.32 c.67.1.1 108281 1vzwA 244 78.02 c.1.2.1 120553 2oo6A 409 78.82 2uz0A 263 78.94 1j96A 323 79.06 c.1.7.1 71616 8rucA 475 79.50 c.1.14.1,d.58.9.1 29339,39245 2bodX 286 80.52 c.6.1.1 128909 1w0mA 226 82.66 c.1.1.1 109027 1qnrA 344 82.72 c.1.8.3 28834 2imrA 420 82.97 2qpxA 376 84.17 2ax3A 502 84.53 c.72.1.4,c.104.1.1 127477,127478 3chvA 284 86.28 2e7fA 262 86.80 1vpqA 273 87.86 c.1.32.1 113974