# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.00e-19 1m65A 245 3.08e-13 c.6.3.1 84847 2anuA 255 3.12e-10 c.6.3.1 127058 2hnhA 910 3.56e-07 1v77A 212 0.2600 c.6.3.2 108402 2p1jA 186 2.204 2qw5A 335 2.489 1y0eA 223 2.817 c.1.2.5 116297 2ob3A 330 2.925 2ehhA 294 2.957 2vc7A 314 3.050 1j9aA 184 3.224 c.55.3.5 84135 1w1iE 357 3.989 c.1.9.1 109051 2hejA 323 4.826 1ra0A 430 5.466 b.92.1.2,c.1.9.5 111756,111757 1w8sA 263 5.563 c.1.10.1 120744 2igiA 180 6.262 1ytaA 180 6.541 c.55.3.5 124002 1j53A 186 6.786 c.55.3.5 77076 1j96A 323 6.980 c.1.7.1 71616 2gzxA 265 7.133 1fkx 349 7.715 1o0yA 260 7.721 c.1.10.1 80756 1zuaX 317 8.143 1yx1A 264 8.271 c.1.15.7 124169 1wljA 189 8.705 c.55.3.5 114734 2guiA 194 9.064 c.55.3.5 135737 1yc5A 246 10.80 c.31.1.5 122910 2qulA 290 11.80 2qahA 303 12.26 2ojpA 292 12.68 2bp1A 360 12.93 4kbpA 432 13.48 b.1.12.1,d.159.1.1 22345,42064 2rfgA 297 14.40 1frb 315 14.90 2hk0A 309 15.67 1i0dA 332 15.83 c.1.9.3 61487 2dkfA 431 15.85 3xis 387 16.12 3c86A 328 16.67 1uozA 315 17.17 c.6.1.1 113354 2hy1A 280 17.22 2q02A 272 17.93 1vflA 356 18.86 c.1.9.1 120041 2r8wA 332 19.10 1k77A 260 19.25 c.1.15.5 72096 1h5yA 253 19.52 c.1.2.1 65638 1k6wA 426 19.69 b.92.1.2,c.1.9.5 68236,68237 2ho4A 259 20.31 1qtwA 285 20.79 c.1.15.1 29392 1vhrA 184 21.01 c.45.1.1 32651 1o2dA 371 22.28 e.22.1.2 86591 1ojxA 263 22.34 c.1.10.1 93164 2gokA 429 23.03 2dskA 311 23.28 2nxfA 322 23.45 1m2kA 249 24.63 c.31.1.5 84754 1j54A 186 24.74 c.55.3.5 77077 1n7kA 234 24.78 c.1.10.1 85374 1lqaA 346 25.03 c.1.7.1 84674 1nal1 297 25.09 1i60A 278 25.17 c.1.15.4 71118 2pcqA 283 26.35 2pgfA 371 26.59 1v5xA 203 27.55 c.1.2.4 100377 2purA 292 27.81 2d2jA 329 28.50 c.1.9.3 131175 2p10A 286 28.57 3cnyA 301 28.63 2agtA 319 28.79 1n82A 331 28.98 c.1.8.3 91703 1xwyA 264 29.19 c.1.9.12 122411 2eg6A 347 29.68 1vh7A 265 29.75 c.1.2.1 100646 2z1aA 552 29.87 3chvA 284 30.48 1qo2A 241 30.81 c.1.2.1 28533 2r91A 286 31.96 3cjpA 272 32.46 1gkpA 458 32.65 b.92.1.3,c.1.9.6 70231,70232 2v9dA 343 32.91 1o5kA 306 33.42 c.1.10.1 92504 1uteA 313 33.81 d.159.1.1 42078 1yixA 265 33.86 c.1.9.12 123371 1rlzA 369 34.98 c.31.1.1 104989 2a0nA 265 35.06 c.1.2.1 125961 1nq6A 302 36.24 c.1.8.3 92046 2atsA 292 36.36 c.1.10.1 127306 4xis 387 36.73 1ajsA 412 37.20 c.67.1.1 34276 2dvtA 327 38.06 c.1.9.15 131793 2yx0A 342 38.36 1kbpA 432 40.52 b.1.12.1,d.159.1.1 22349,42068 1dhpA 292 41.09 c.1.10.1 29097 1w0hA 204 41.37 c.55.3.5 114064 1pszA 303 41.85 c.92.2.2 35600 1xkyA 301 42.01 c.1.10.1 122094 2jfuA 291 42.27 1bf6A 291 42.38 c.1.9.3 29065 1zgdA 312 42.89 2gfiA 458 43.01 2ffiA 288 43.65 c.1.9.15 133385 3b9oA 440 43.78 1thfD 253 44.92 c.1.2.1 28535 2agkA 260 46.10 3buvA 326 46.81 1rxyA 253 47.00 c.56.2.1 98065 2z06A 252 47.02 2yvdA 431 47.80 1j6oA 268 49.14 c.1.9.12 77088 1sflA 238 49.39 c.1.10.1 112077 2amxA 376 50.47 c.1.9.1 127024 1gveA 327 51.13 c.1.7.1 70597 1muwA 386 51.51 c.1.15.3 79495 1zzmA 259 51.78 c.1.9.12 125911 1nrwA 288 53.17 c.108.1.10 86128 1fobA 334 53.22 c.1.8.3 83255 1rrmA 386 55.09 e.22.1.2 105081 2gwgA 350 55.93 c.1.9.15 135805 1z15A 344 56.33 1dhs 344 56.43 2hbvA 334 56.85 c.1.9.15 136320 2ogwA 310 56.93 2f6kA 307 57.43 c.1.9.15 133047 1qnrA 344 57.91 c.1.8.3 28834 2imrA 420 60.48 2aamA 309 60.58 c.1.8.15 126489 2a6lA 292 60.82 c.1.10.1 126285 1vbjA 281 61.17 2nuwA 288 61.18 1ede 310 61.62 1a4mA 349 62.02 c.1.9.1 29014 3d0cA 314 62.24 2obiA 183 62.25 2cygA 312 62.36 c.1.8.3 131025 1xzoA 174 63.47 c.47.1.10 122474 1yxyA 234 63.55 c.1.2.5 124203 2j4jA 226 63.75 2fjtA 182 64.17 1tvlA 454 65.49 c.1.16.4 107366 1wueA 386 66.23 c.1.11.2,d.54.1.1 114892,114893 1jq5A 370 66.26 e.22.1.2 67084 1tml 286 67.43 1xyzA 347 69.36 c.1.8.3 28804 1w5tA 412 70.35 a.4.5.11,c.37.1.20 114255,114256 2bogX 286 70.39 8rucA 475 71.04 c.1.14.1,d.58.9.1 29339,39245 1vpqA 273 71.37 c.1.32.1 113974 2d59A 144 71.56 c.2.1.8 131266 1a88A 275 71.64 c.69.1.12 34707 1hl2A 297 72.07 c.1.10.1 83581 1zsxA 347 74.82 1exbA 332 75.01 c.1.7.1 28666 1vljA 407 75.98 e.22.1.2 108832 1sfjA 238 76.17 c.1.10.1 112075 1ma3A 253 76.85 c.31.1.5 78883 1w3iA 293 76.99 c.1.10.1 109152 2a6nA 292 79.52 c.1.10.1 126289 1hw6A 278 79.95 c.1.7.1 61296 2e7fA 262 80.79 1pq4A 291 81.66 c.92.2.2 94995 1s1pA 331 81.80 c.1.7.1 98350 1yw1A 442 82.45 c.1.16.4 124130 1v0lA 313 83.33 c.1.8.3 108207 1l6sA 323 83.59 c.1.10.3 73627 2c4nA 250 86.20 c.108.1.14 129837 1kq3A 376 86.28 e.22.1.2 68790 2q8xA 331 86.64 2v5jA 287 87.21 2gshA 414 87.59 2dh2A 424 89.89 2oo6A 409 89.94