# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.88e-10 1m65A 245 1.43e-06 c.6.3.1 84847 2anuA 255 0.00997 c.6.3.1 127058 2hnhA 910 0.5706 1vemA 516 2.703 b.3.1.1,c.1.8.1 120021,120022 1hdoA 206 4.078 c.2.1.2 60965 1gveA 327 5.042 c.1.7.1 70597 2bp1A 360 5.293 1itcA 516 5.490 b.3.1.1,c.1.8.1 83705,83706 2nxfA 322 6.301 1yixA 265 6.424 c.1.9.12 123371 1w3iA 293 6.608 c.1.10.1 109152 2i5gA 325 6.853 2cw6A 298 8.969 2bs9A 503 9.718 b.71.1.2,c.1.8.3 129062,129063 3cjpA 272 9.825 2nuwA 288 10.00 1r7aA 504 10.21 b.71.1.1,c.1.8.1 97192,97193 1bf6A 291 11.25 c.1.9.3 29065 2q8xA 331 11.79 1qo2A 241 12.47 c.1.2.1 28533 1yxyA 234 13.29 c.1.2.5 124203 1lqaA 346 14.08 c.1.7.1 84674 1gkpA 458 15.37 b.92.1.3,c.1.9.6 70231,70232 2q09A 416 16.13 1yhtA 367 16.20 c.1.8.6 123213 1xq6A 253 16.25 c.2.1.2 115829 1zzmA 259 16.39 c.1.9.12 125911 1ub3A 220 17.66 c.1.10.1 88395 2gduA 504 18.46 b.71.1.1,c.1.8.1 135032,135033 3bofA 566 21.77 1d8wA 426 22.13 c.1.15.2 29394 2bfgA 503 22.50 b.71.1.2,c.1.8.3 128423,128424 1n82A 331 22.88 c.1.8.3 91703 2i57A 438 23.48 1frb 315 26.49 1ra0A 430 26.60 b.92.1.2,c.1.9.5 111756,111757 2r91A 286 29.52 2depA 356 29.78 1vjzA 341 31.48 c.1.8.3 100838 2q46A 253 32.50 c.2.1.2 139825 1mzhA 225 33.78 c.1.10.1 79698 2hx1A 284 33.89 1e43A 483 35.24 b.71.1.1,c.1.8.1 59217,59218 2bgsA 344 36.45 1ituA 369 37.19 c.1.9.7 71423 1qh5A 260 37.89 d.157.1.2 42057 1k6xA 352 38.26 c.2.1.2 68238 3c86A 328 38.74 2gokA 429 39.53 1r85A 379 40.21 c.1.8.3 104839 2ftwA 521 40.43 b.92.1.3,c.1.9.6 134083,134084 1vzwA 244 40.44 c.1.2.1 120553 1mi3A 322 40.68 c.1.7.1 91274 1g8mA 593 40.73 c.24.1.3,c.97.1.4 60371,60372 1zjaA 557 40.80 1huqA 164 41.32 c.37.1.8 32020 2h8zA 359 42.25 2p5yA 311 42.52 1tml 286 43.79 1byb 495 44.03 2gwnA 452 44.29 2f2hA 773 44.42 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 2qahA 303 44.65 1zgdA 312 44.84 1q7zA 566 45.41 c.1.21.2,c.1.26.1 96090,96091 2bogX 286 45.46 1tv8A 340 46.22 c.1.28.3 107352 1vd6A 224 46.24 c.1.18.3 119991 1r2qA 170 46.94 c.37.1.8 96874 2a4kA 263 47.10 c.2.1.2 126156 2qulA 290 47.61 2r6oA 294 48.27 1ceo 343 49.05 2gzxA 265 49.36 1vljA 407 49.64 e.22.1.2 108832 2ojpA 292 49.73 1w32A 348 49.84 c.1.8.3 114120 2obwA 258 52.65 1us0A 316 54.07 c.1.7.1 99850 1ek0A 170 54.28 c.37.1.8 32076 2q02A 272 55.13 2de3A 365 55.81 1ydnA 295 55.97 2ovlA 371 56.27 1rmwA 212 56.80 1vliA 385 56.84 b.85.1.1,c.1.10.6 108830,108831 1z06A 189 57.49 c.37.1.8 124301 2bgkA 278 57.95 c.2.1.2 128480 1ua7A 422 58.24 b.71.1.1,c.1.8.1 107759,107760 1ads 315 59.08 2oqyA 391 59.90 2g3fA 421 61.11 2pcqA 283 61.46 1nal1 297 61.50 2podA 410 63.09 1goxA 369 63.61 c.1.4.1 28607 1mv8A 436 64.67 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1lvwA 295 64.85 c.68.1.6 84723 1mh1A 186 65.27 c.37.1.8 32002 2i2xA 461 65.69 1j6oA 268 66.13 c.1.9.12 77088 1x3sA 195 66.70 c.37.1.8 121670 1v3hA 495 67.30 c.1.8.1 108303 3bc9A 599 67.51 1c7sA 858 67.55 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1dxeA 256 68.15 c.1.12.5 29310 1k6wA 426 68.33 b.92.1.2,c.1.9.5 68236,68237 2puzA 419 68.53 1b8oA 284 68.99 c.56.2.1 33762 2c5aA 379 69.45 c.2.1.2 129894 1lwjA 441 69.73 b.71.1.1,c.1.8.1 74303,74304 1xrtA 467 70.44 b.92.1.3,c.1.9.6 122258,122259 2fv7A 331 70.54 c.72.1.1 134197 2a9kA 187 70.72 c.37.1.8 126442 1clxA 347 71.20 c.1.8.3 28899 1bg4A 302 72.49 c.1.8.3 28806 2agtA 319 73.57 2q0oA 236 74.11 1xsjA 778 75.15 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2agkA 260 75.45 2oo6A 409 75.98 2aamA 309 76.01 c.1.8.15 126489 2d59A 144 76.04 c.2.1.8 131266 2ragA 417 76.50 1wdpA 495 78.80 c.1.8.1 120907 2purA 292 79.57 1yzqA 170 80.87 c.37.1.8 124286 2qedA 258 81.94 1ur1A 378 81.96 c.1.8.3 99804 2ewsA 287 82.06 2bmeA 186 82.72 c.37.1.8 128790 2pozA 392 82.96 2qrlA 394 83.99 1zuaX 317 86.21 1oivA 191 86.23 c.37.1.8 93076 2i1oA 398 86.65 1v77A 212 86.68 c.6.3.2 108402 1gkrA 458 87.29 b.92.1.3,c.1.9.6 70251,70252 2hk0A 309 87.43 1pz1A 333 87.47 c.1.7.1 95390 2fn4A 181 87.98 c.37.1.8 133806 1u1jA 765 88.84 c.1.22.2,c.1.22.2 107590,107591 2ag5A 246 89.50 c.2.1.2 126719 1ecpA 238 89.63 c.56.2.1 33775 1n7kA 234 89.72 c.1.10.1 85374