Best Alignments for T0440

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2yxoA/T0440-2yxoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yxoA/T0440-2yxoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3767e-262.93e-151
1m65A/T0440-1m65A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m65A/T0440-1m65A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3945e-164.86e-77 c.6.3.1
2hnhA/T0440-2hnhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hnhA/T0440-2hnhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2194e-059.86e-32
2hpiA/T0440-2hpiA-t04-global-adpstyle1.a2m 2hpiA/T0440-2hpiA-t04-global-adpstyle1.al 7.9389e-043.54e-18
2gzxA/T0440-2gzxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gzxA/T0440-2gzxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0909e-034.88e-31
1zzmA/T0440-1zzmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zzmA/T0440-1zzmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4215e-035.02e-32 c.1.9.12
2hqaA/T0440-2hqaA-t04-global-adpstyle1.a2m 2hqaA/T0440-2hqaA-t04-global-adpstyle1.al 1.0770e-027.83e-18
2hk0A/T0440-2hk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hk0A/T0440-2hk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5442e-024.69e-33
1el3A/T0440-1el3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1el3A/T0440-1el3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6070e-024.66e-29 1frb c.1.7.1
2pgfA/T0440-2pgfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2pgfA/T0440-2pgfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8236e-022.93e-28

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001