Best Alignments for T0440

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2yxoA/T0440-2yxoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yxoA/T0440-2yxoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0184e-332.93e-151
1m65A/T0440-1m65A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m65A/T0440-1m65A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7395e-184.86e-77 c.6.3.1
2gzxA/T0440-2gzxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gzxA/T0440-2gzxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6694e-044.88e-31
2depA/T0440-2depA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2depA/T0440-2depA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1936e-042.55e-38
2pgfA/T0440-2pgfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2pgfA/T0440-2pgfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7672e-032.93e-28
1r85A/T0440-1r85A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r85A/T0440-1r85A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9747e-034.73e-36 c.1.8.3
2hk0A/T0440-2hk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hk0A/T0440-2hk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5571e-034.69e-33
1zuaX/T0440-1zuaX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zuaX/T0440-1zuaX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5985e-032.41e-30
2qt3A/T0440-2qt3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qt3A/T0440-2qt3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2386e-031.19e-32
1a4mA/T0440-1a4mA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a4mA/T0440-1a4mA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9787e-032.26e-32 1a4mA c.1.9.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001