Best Alignments for T0440

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2yxoA/T0440-2yxoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yxoA/T0440-2yxoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5169e-212.70e-102
1m65A/T0440-1m65A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m65A/T0440-1m65A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4194e-156.43e-69 c.6.3.1
2hnhA/T0440-2hnhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hnhA/T0440-2hnhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9509e-069.86e-32
2hpiA/T0440-2hpiA-t04-global-adpstyle1.a2m 2hpiA/T0440-2hpiA-t04-global-adpstyle1.al 6.6349e-043.54e-18
2hqaA/T0440-2hqaA-t04-global-adpstyle1.a2m 2hqaA/T0440-2hqaA-t04-global-adpstyle1.al 9.2869e-047.83e-18
1zzmA/T0440-1zzmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zzmA/T0440-1zzmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.5213e-035.02e-32 c.1.9.12
2gzxA/T0440-2gzxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gzxA/T0440-2gzxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4560e-027.70e-29
2hk0A/T0440-2hk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hk0A/T0440-2hk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7334e-024.04e-30
1f07A/T0440-1f07A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f07A/T0440-1f07A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3731e-023.29e-22 1ezwA c.1.16.3
2p1jA/T0440-2p1jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2p1jA/T0440-2p1jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.9164e-024.75e-07

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001