Best Alignments for T0440

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2yxoA	3.8315e-22	2yxoA/T0440-2yxoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1m65A	2.8395e-15	1m65A/T0440-1m65A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2anuA	1.2243e-11	2anuA/T0440-2anuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2hnhA	5.7780e-08	2hnhA/T0440-2hnhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v77A	6.2176e-04	1v77A/T0440-1v77A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.2
1j6oA	1.4677e+00	1j6oA/T0440-1j6oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
2gzxA	1.7117e+00	2gzxA/T0440-2gzxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vflA	2.2065e+00	1vflA/T0440-1vflA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
2ob3A	2.4477e+00	2ob3A/T0440-2ob3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zzmA	2.9207e+00	1zzmA/T0440-1zzmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
2ffiA	3.2776e+00	2ffiA/T0440-2ffiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.15
2vc7A	3.5753e+00	2vc7A/T0440-2vc7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yixA	4.0901e+00	1yixA/T0440-1yixA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
2qahA	4.2108e+00	2qahA/T0440-2qahA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1i60A	4.8913e+00	1i60A/T0440-1i60A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.15.4
1xwyA	5.4747e+00	1xwyA/T0440-1xwyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
2gokA	5.5645e+00	2gokA/T0440-2gokA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pajA	6.2138e+00	2pajA/T0440-2pajA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pgfA	6.6568e+00	2pgfA/T0440-2pgfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cnyA	6.6606e+00	3cnyA/T0440-3cnyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001