# List of top-scoring protein chains for T0440.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	3.35e-21		
1m65A	245	1.86e-09	c.6.3.1	84847
2anuA	255	0.2011	c.6.3.1	127058
2hpiA	1220	10.14		
2gzxA	265	16.39		
1j30A	144	20.90	a.25.1.1	90806
3cebA	194	40.18		
1gp6A	356	43.86	b.82.2.1	65441
2brtA	355	43.87	b.82.2.1	129018
2g7lA	243	43.93	a.4.1.9,a.121.1.1	134734,134735
1epuA	591	44.87	e.25.1.1	43358
1vggA	161	48.09	d.256.1.1	113647
3cdkB	219	48.58		
1dxeA	256	60.21	c.1.12.5	29310
1r1dA	247	61.81	c.69.1.29	96813
1m33A	258	62.21	c.69.1.26	78514
1ekeA	230	67.26	c.55.3.1	33572
2fywA	267	78.64	c.135.1.1	134408
3b4uA	294	83.32		
2rauA	354	83.42		
1tz9A	367	84.74	c.1.15.6	107466
1vp8A	201	85.20	c.49.1.2	113947