# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 9.29e-20 1m65A 245 1.49e-10 c.6.3.1 84847 2anuA 255 0.001367 c.6.3.1 127058 2hnhA 910 0.001931 1j6oA 268 1.860 c.1.9.12 77088 1zzmA 259 2.369 c.1.9.12 125911 2qulA 290 2.472 2v5jA 287 2.725 1q7zA 566 4.905 c.1.21.2,c.1.26.1 96090,96091 1k6wA 426 5.522 b.92.1.2,c.1.9.5 68236,68237 2fb2A 340 5.894 2gzxA 265 7.207 1a4mA 349 7.637 c.1.9.1 29014 1yixA 265 7.885 c.1.9.12 123371 1tv8A 340 7.914 c.1.28.3 107352 3cnyA 301 9.426 2nzlA 392 9.780 1w1iE 357 10.79 c.1.9.1 109051 1rhcA 330 12.07 c.1.16.3 97468 2pgfA 371 12.34 1s1pA 331 13.27 c.1.7.1 98350 1kcxA 518 15.75 b.92.1.3,c.1.9.6 90953,90954 1ccwA 137 16.09 c.23.6.1 31238 1mi3A 322 17.50 c.1.7.1 91274 2b81A 323 17.60 1ceo 343 17.61 1vflA 356 18.06 c.1.9.1 120041 1xwyA 264 18.58 c.1.9.12 122411 3c8nA 356 19.99 1qumA 285 20.18 c.1.15.1 29393 1fkx 349 20.58 2yxbA 161 22.83 1ezwA 349 23.50 c.1.16.3 29558 2i5gA 325 23.80 1j2rA 199 26.43 c.33.1.3 90788 1fh9A 312 27.66 c.1.8.3 28913 2ragA 417 28.36 1qtwA 285 29.06 c.1.15.1 29392 1xrsB 262 31.37 c.23.6.1,d.230.4.1 115884,115885 1j96A 323 32.41 c.1.7.1 71616 1zgdA 312 34.69 2podA 410 36.00 1ituA 369 36.27 c.1.9.7 71423 3b40A 417 36.79 1vjzA 341 38.85 c.1.8.3 100838 2pp3A 398 39.41 1r30A 369 40.68 c.1.28.1 96895 1hw6A 278 40.97 c.1.7.1 61296 2amxA 376 41.68 c.1.9.1 127024 1yxyA 234 42.30 c.1.2.5 124203 1k77A 260 43.41 c.1.15.5 72096 2obiA 183 44.70 2rduA 387 45.73 5reqA 727 45.91 c.1.19.1,c.23.6.1 29632,31259 1rvkA 382 46.12 c.1.11.2,d.54.1.1 97928,97929 2qw5A 335 47.12 1tkkA 366 48.60 c.1.11.2,d.54.1.1 107089,107090 1mdl 359 49.14 1nq6A 302 51.08 c.1.8.3 92046 1i60A 278 51.31 c.1.15.4 71118 1ekxA 311 52.74 c.78.1.1,c.78.1.1 35088,35089 1qwkA 317 53.41 c.1.7.1 96482 1goxA 369 53.55 c.1.4.1 28607 2o14A 375 55.71 1d8wA 426 57.03 c.1.15.2 29394 1im5A 180 58.61 c.33.1.3 66211 2hk0A 309 58.80 1bmtA 246 58.89 a.46.1.1,c.23.6.1 17757,31235 1byuA 216 59.76 c.37.1.8 32032 1frb 315 61.79 1v0lA 313 62.70 c.1.8.3 108207 2og9A 393 63.18 1f60A 458 63.49 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1ra0A 430 63.93 b.92.1.2,c.1.9.5 111756,111757 1us0A 316 67.05 c.1.7.1 99850 1zhaA 267 67.79 1f07A 321 67.93 c.1.16.3 59560 2abbA 364 68.18 c.1.4.1 126517 2hzgA 401 68.63 2tmdA 729 68.80 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1o0yA 260 69.85 c.1.10.1 80756 2du2A 374 70.23 1g0cA 364 70.38 c.1.8.3 60165 1reqA 727 70.71 c.1.19.1,c.23.6.1 29620,31247 2p10A 286 70.77 1mdlA 359 71.07 c.1.11.2,d.54.1.1 29247,38891 3ccgA 190 72.88 1el3A 316 74.11 c.1.7.1 28672 1i7qB 193 74.76 c.23.16.1 61902 1lroA 267 75.24 c.1.10.4 78161 2p0oA 372 76.73 1z41A 338 77.31 c.1.4.1 124421 3bjsA 428 77.92 1oc7A 364 78.82 c.6.1.1 86794 1m5wA 243 79.17 c.1.24.1 84836 1jmvA 141 79.68 c.26.2.4 66897 1o94A 729 79.88 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2q8xA 331 80.25 2depA 356 81.24 1qcwA 410 81.77 c.1.4.1 28622 2i7gA 376 82.44 1zkpA 268 85.49 d.157.1.9 125205 2a5hA 416 88.70 1dxeA 256 88.70 c.1.12.5 29310