# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 4.19e-22 1m65A 245 6.50e-12 c.6.3.1 84847 2anuA 255 0.000173 c.6.3.1 127058 2hnhA 910 0.000720 2qulA 290 2.003 1zzmA 259 3.102 c.1.9.12 125911 1j6oA 268 3.595 c.1.9.12 77088 1a4mA 349 3.911 c.1.9.1 29014 1k6wA 426 3.925 b.92.1.2,c.1.9.5 68236,68237 1yixA 265 5.398 c.1.9.12 123371 1w1iE 357 7.333 c.1.9.1 109051 1ceo 343 8.401 2v5jA 287 8.680 2fb2A 340 9.130 2i5gA 325 9.240 3cnyA 301 9.430 1fkx 349 9.490 2pgfA 371 9.805 2nzlA 392 10.15 1rhcA 330 10.36 c.1.16.3 97468 1q7zA 566 10.50 c.1.21.2,c.1.26.1 96090,96091 1ccwA 137 10.69 c.23.6.1 31238 1tv8A 340 11.10 c.1.28.3 107352 1vflA 356 11.77 c.1.9.1 120041 2yxbA 161 13.83 1s1pA 331 16.24 c.1.7.1 98350 2gzxA 265 18.05 2ragA 417 19.34 1ezwA 349 19.58 c.1.16.3 29558 1qumA 285 19.69 c.1.15.1 29393 3c8nA 356 20.99 1kcxA 518 21.68 b.92.1.3,c.1.9.6 90953,90954 1j2rA 199 22.46 c.33.1.3 90788 1xrsB 262 22.52 c.23.6.1,d.230.4.1 115884,115885 2b81A 323 25.84 5reqA 727 27.43 c.1.19.1,c.23.6.1 29632,31259 1xwyA 264 28.36 c.1.9.12 122411 1fh9A 312 32.93 c.1.8.3 28913 3b40A 417 33.34 1mi3A 322 33.64 c.1.7.1 91274 2tmdA 729 33.74 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1zhaA 267 34.44 1qtwA 285 34.63 c.1.15.1 29392 1ituA 369 35.13 c.1.9.7 71423 1im5A 180 36.44 c.33.1.3 66211 2amxA 376 39.82 c.1.9.1 127024 1r30A 369 40.18 c.1.28.1 96895 2q8xA 331 40.44 1zkpA 268 41.22 d.157.1.9 125205 1be1 137 42.05 1reqA 727 42.61 c.1.19.1,c.23.6.1 29620,31247 1lroA 267 42.63 c.1.10.4 78161 2podA 410 43.14 2hk0A 309 43.39 1o94A 729 43.79 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2pp3A 398 44.62 2obiA 183 45.28 1yxyA 234 45.31 c.1.2.5 124203 1goxA 369 45.65 c.1.4.1 28607 1hw6A 278 48.18 c.1.7.1 61296 1f60A 458 48.42 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1g0cA 364 48.77 c.1.8.3 60165 2qw5A 335 50.34 1nq6A 302 51.82 c.1.8.3 92046 1j96A 323 52.17 c.1.7.1 71616 1eceA 358 53.58 c.1.8.3 28813 2rduA 387 55.31 2depA 356 55.50 2du2A 374 56.49 1h5vA 304 57.73 c.1.8.3 70898 1d3gA 367 60.36 c.1.4.1 28600 1ecxA 384 61.14 c.67.1.3 34431 1k77A 260 61.22 c.1.15.5 72096 1ra0A 430 61.84 b.92.1.2,c.1.9.5 111756,111757 1d8wA 426 64.47 c.1.15.2 29394 1rvkA 382 65.15 c.1.11.2,d.54.1.1 97928,97929 1z41A 338 66.16 c.1.4.1 124421 1rk6A 496 66.25 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2ajrA 331 74.43 c.72.1.1 126892 1kl1A 419 75.01 c.67.1.4 72663 2ac2A 309 75.11 2oczA 231 75.11 2p10A 286 76.29 2a5hA 416 77.59 1byuA 216 78.20 c.37.1.8 32032 1vd6A 224 78.44 c.1.18.3 119991 1ekxA 311 79.84 c.78.1.1,c.78.1.1 35088,35089 1a5kC 566 80.20 b.92.1.1,c.1.9.2 28425,29047 2rc5A 314 82.79 2og9A 393 84.11 1nmoA 247 84.69 c.135.1.1 91980 2bp1A 360 86.41 2o14A 375 86.47 1i7qB 193 88.08 c.23.16.1 61902 2i7gA 376 88.60 1v0lA 313 88.67 c.1.8.3 108207 1bmtA 246 88.97 a.46.1.1,c.23.6.1 17757,31235 2fywA 267 89.13 c.135.1.1 134408 1uumA 372 89.91 c.1.4.1 100010