# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.83e-29 1m65A 245 2.30e-15 c.6.3.1 84847 2anuA 255 6.51e-05 c.6.3.1 127058 2hnhA 910 0.000136 2v5jA 287 0.8584 1j6oA 268 1.163 c.1.9.12 77088 1zzmA 259 1.526 c.1.9.12 125911 2qulA 290 2.099 2gzxA 265 4.448 1yixA 265 4.658 c.1.9.12 123371 2yxbA 161 6.357 1q7zA 566 7.052 c.1.21.2,c.1.26.1 96090,96091 1rhcA 330 8.019 c.1.16.3 97468 2nzlA 392 9.090 1ezwA 349 10.32 c.1.16.3 29558 1ccwA 137 10.63 c.23.6.1 31238 1a4mA 349 11.83 c.1.9.1 29014 2fb2A 340 13.97 2i5gA 325 14.66 1xfkA 336 15.90 c.42.1.1 115264 3cnyA 301 16.45 2dr1A 386 17.83 1lroA 267 18.02 c.1.10.4 78161 3c8nA 356 18.16 1vflA 356 19.18 c.1.9.1 120041 1j2rA 199 20.19 c.33.1.3 90788 1xrsB 262 22.66 c.23.6.1,d.230.4.1 115884,115885 2pgfA 371 23.21 1zhaA 267 23.39 1kl1A 419 23.92 c.67.1.4 72663 1s1pA 331 25.04 c.1.7.1 98350 1xwyA 264 25.95 c.1.9.12 122411 1vjzA 341 26.53 c.1.8.3 100838 1tif 78 27.17 1d1qA 161 27.23 c.44.1.1 32642 1m5wA 243 28.61 c.1.24.1 84836 5reqA 727 28.73 c.1.19.1,c.23.6.1 29632,31259 1w1iE 357 29.42 c.1.9.1 109051 1ceo 343 29.72 1k6wA 426 29.73 b.92.1.2,c.1.9.5 68236,68237 1fkx 349 30.63 1elqA 390 31.47 c.67.1.3 34436 2p10A 286 34.40 2depA 356 35.06 2pp3A 398 35.87 1tv8A 340 36.06 c.1.28.3 107352 1egzA 291 36.72 c.1.8.3 28828 1rvkA 382 38.58 c.1.11.2,d.54.1.1 97928,97929 3ccgA 190 38.73 1reqA 727 38.78 c.1.19.1,c.23.6.1 29620,31247 1qtwA 285 40.57 c.1.15.1 29392 1k77A 260 41.16 c.1.15.5 72096 1d3gA 367 42.09 c.1.4.1 28600 1mdl 359 42.49 1uumA 372 43.18 c.1.4.1 100010 1im5A 180 43.21 c.33.1.3 66211 1o1yA 239 43.95 c.23.16.1 86554 1v77A 212 47.20 c.6.3.2 108402 1vd6A 224 48.38 c.1.18.3 119991 1yxyA 234 50.16 c.1.2.5 124203 1fh9A 312 50.48 c.1.8.3 28913 1ecxA 384 51.07 c.67.1.3 34431 2hzgA 401 51.79 2rduA 387 52.68 1kcxA 518 52.83 b.92.1.3,c.1.9.6 90953,90954 1ho1A 242 53.27 c.1.24.1 61097 2o14A 375 53.67 1nq6A 302 55.55 c.1.8.3 92046 1goxA 369 55.68 c.1.4.1 28607 2qw5A 335 55.73 1tkkA 366 56.51 c.1.11.2,d.54.1.1 107089,107090 1z57A 339 56.75 1tifA 78 57.13 d.15.8.1 37836 2podA 410 58.14 1v0lA 313 58.23 c.1.8.3 108207 2hxtA 441 59.36 2abbA 364 59.69 c.1.4.1 126517 2b81A 323 60.23 1f60A 458 61.60 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1ekxA 311 62.13 c.78.1.1,c.78.1.1 35088,35089 2obiA 183 62.17 2btdA 210 64.39 1d0vA 356 64.85 c.39.1.1 32476 2al1A 436 66.21 c.1.11.1,d.54.1.1 126949,126950 1ii7A 333 67.05 d.159.1.4 62415 2oczA 231 67.40 1aj2A 282 67.92 c.1.21.1 29665 1r30A 369 68.42 c.1.28.1 96895 1mi3A 322 69.40 c.1.7.1 91274 1yfsA 465 70.15 a.203.1.1,d.104.1.1 123088,123089 1vjoA 393 71.20 c.67.1.3 100827 1mdlA 359 71.71 c.1.11.2,d.54.1.1 29247,38891 1volA 204 72.04 a.74.1.2,a.74.1.2 18370,18371 1a2zA 220 72.12 c.56.4.1 33794 1xyfA 436 72.24 b.42.2.1,c.1.8.3 25577,28909 1zgdA 312 72.37 2du2A 374 72.60 1iomA 377 72.86 a.103.1.1 83698 1oneA 436 72.95 c.1.11.1,d.54.1.1 29200,38844 1bmtA 246 72.98 a.46.1.1,c.23.6.1 17757,31235 2og9A 393 73.54 2qgyA 391 73.56 2jg2A 422 73.98 2hk0A 309 75.95 1zkpA 268 76.38 d.157.1.9 125205 1vr6A 350 77.58 c.1.10.4 120439 2amxA 376 77.90 c.1.9.1 127024 2hyxA 352 78.20 3bjsA 428 78.54 1iu8A 206 79.26 c.56.4.1 71436 3ciwA 348 82.31 1vbuA 328 85.04 c.1.8.3 119963 3b40A 417 86.30 1sxjA 511 86.69 a.80.1.1,c.37.1.20 106081,106082 1qwtA 255 86.96 b.26.1.3 96501 1pe1A 267 87.42 c.1.10.4 94591 2ragA 417 87.83 1nnlA 225 88.30 c.108.1.4 85906 1yt3A 375 88.56 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994