# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.85e-27 1m65A 245 1.85e-14 c.6.3.1 84847 2anuA 255 0.000192 c.6.3.1 127058 2hnhA 910 0.000295 1j6oA 268 0.6365 c.1.9.12 77088 2v5jA 287 1.088 1zzmA 259 1.511 c.1.9.12 125911 2qulA 290 1.730 2gzxA 265 4.648 1yixA 265 4.909 c.1.9.12 123371 1q7zA 566 5.901 c.1.21.2,c.1.26.1 96090,96091 2yxbA 161 6.516 1rhcA 330 7.036 c.1.16.3 97468 1a4mA 349 9.325 c.1.9.1 29014 2i5gA 325 9.608 2fb2A 340 9.665 1xfkA 336 9.731 c.42.1.1 115264 2nzlA 392 10.55 1ccwA 137 10.75 c.23.6.1 31238 1ezwA 349 11.76 c.1.16.3 29558 3cnyA 301 14.97 1s1pA 331 15.04 c.1.7.1 98350 1k6wA 426 15.17 b.92.1.2,c.1.9.5 68236,68237 3c8nA 356 18.59 1j2rA 199 19.80 c.33.1.3 90788 1xrsB 262 19.82 c.23.6.1,d.230.4.1 115884,115885 2pgfA 371 19.91 2dr1A 386 21.14 1lroA 267 21.55 c.1.10.4 78161 1tv8A 340 21.74 c.1.28.3 107352 1xwyA 264 22.30 c.1.9.12 122411 1fkx 349 23.34 1ceo 343 24.28 1vflA 356 26.58 c.1.9.1 120041 1kl1A 419 26.64 c.67.1.4 72663 2pp3A 398 26.98 1rvkA 382 27.47 c.1.11.2,d.54.1.1 97928,97929 1zhaA 267 27.96 1egzA 291 28.23 c.1.8.3 28828 1qtwA 285 28.30 c.1.15.1 29392 1w1iE 357 28.65 c.1.9.1 109051 1fh9A 312 28.71 c.1.8.3 28913 1mi3A 322 31.29 c.1.7.1 91274 1vjzA 341 31.83 c.1.8.3 100838 1d1qA 161 31.86 c.44.1.1 32642 1m5wA 243 32.57 c.1.24.1 84836 2abbA 364 33.83 c.1.4.1 126517 5reqA 727 34.12 c.1.19.1,c.23.6.1 29632,31259 2depA 356 35.01 1reqA 727 36.71 c.1.19.1,c.23.6.1 29620,31247 1r30A 369 37.01 c.1.28.1 96895 1d3gA 367 37.38 c.1.4.1 28600 1tkkA 366 37.93 c.1.11.2,d.54.1.1 107089,107090 1kcxA 518 38.27 b.92.1.3,c.1.9.6 90953,90954 1mdl 359 38.49 2ragA 417 39.15 1aj2A 282 40.26 c.1.21.1 29665 2qw5A 335 40.33 2o14A 375 40.80 1nq6A 302 41.00 c.1.8.3 92046 3ccgA 190 41.11 3b40A 417 41.57 2p10A 286 42.78 1uumA 372 42.97 c.1.4.1 100010 1im5A 180 44.33 c.33.1.3 66211 1tif 78 44.47 1elqA 390 45.11 c.67.1.3 34436 1ecxA 384 47.70 c.67.1.3 34431 2hk0A 309 47.82 2hzgA 401 48.29 1zgdA 312 48.40 1ekxA 311 48.68 c.78.1.1,c.78.1.1 35088,35089 1k77A 260 49.42 c.1.15.5 72096 1vjoA 393 50.66 c.67.1.3 100827 2hxtA 441 51.38 1ituA 369 52.02 c.1.9.7 71423 2og9A 393 52.18 1f60A 458 53.45 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 3ciwA 348 54.36 1yxyA 234 54.49 c.1.2.5 124203 1j96A 323 54.85 c.1.7.1 71616 1v77A 212 55.98 c.6.3.2 108402 3bjsA 428 56.24 1aj2 282 56.42 1bmtA 246 57.03 a.46.1.1,c.23.6.1 17757,31235 2rduA 387 57.17 1goxA 369 57.18 c.1.4.1 28607 2al1A 436 57.86 c.1.11.1,d.54.1.1 126949,126950 1vd6A 224 57.98 c.1.18.3 119991 2podA 410 60.19 2obiA 183 61.48 1mdlA 359 63.21 c.1.11.2,d.54.1.1 29247,38891 2b81A 323 64.73 2amxA 376 65.13 c.1.9.1 127024 1a2zA 220 65.23 c.56.4.1 33794 1v0lA 313 67.29 c.1.8.3 108207 1z41A 338 67.65 c.1.4.1 124421 2hyxA 352 68.54 1tx2A 297 69.98 c.1.21.1 107420 1byuA 216 70.18 c.37.1.8 32032 2qgyA 391 71.88 1qumA 285 73.04 c.1.15.1 29393 1vr6A 350 73.83 c.1.10.4 120439 1o1yA 239 74.73 c.23.16.1 86554 2al2A 436 76.10 c.1.11.1,d.54.1.1 126953,126954 1ii7A 333 76.46 d.159.1.4 62415 1sxjA 511 76.58 a.80.1.1,c.37.1.20 106081,106082 1oc7A 364 76.87 c.6.1.1 86794 1ho1A 242 77.52 c.1.24.1 61097 1o0yA 260 78.17 c.1.10.1 80756 1iu8A 206 78.53 c.56.4.1 71436 2gouA 365 79.35 1z57A 339 80.97 2cw6A 298 82.90 2jg2A 422 83.03 1ad4A 266 83.21 c.1.21.1 29670 1yfsA 465 83.26 a.203.1.1,d.104.1.1 123088,123089 2bp1A 360 83.56 2yr1A 257 84.89 1h5vA 304 85.55 c.1.8.3 70898 2i2wA 212 86.79 1xyfA 436 86.99 b.42.2.1,c.1.8.3 25577,28909 2a5hA 416 87.35 1d8wA 426 87.44 c.1.15.2 29394 2p0oA 372 88.11 1volA 204 88.15 a.74.1.2,a.74.1.2 18370,18371 1zkpA 268 88.93 d.157.1.9 125205 1vbuA 328 89.53 c.1.8.3 119963 1h0cA 392 89.61 c.67.1.3 83424