# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 7.70e-27 1m65A 245 3.13e-14 c.6.3.1 84847 2anuA 255 0.000264 c.6.3.1 127058 2hnhA 910 0.000388 1j6oA 268 0.7821 c.1.9.12 77088 2v5jA 287 1.002 1zzmA 259 1.426 c.1.9.12 125911 2qulA 290 1.837 2gzxA 265 3.623 1yixA 265 3.868 c.1.9.12 123371 1q7zA 566 4.252 c.1.21.2,c.1.26.1 96090,96091 2yxbA 161 5.611 1rhcA 330 6.063 c.1.16.3 97468 2fb2A 340 8.149 2nzlA 392 8.229 2i5gA 325 10.36 1ezwA 349 10.82 c.1.16.3 29558 1ccwA 137 11.00 c.23.6.1 31238 3cnyA 301 13.95 1j2rA 199 15.12 c.33.1.3 90788 1xfkA 336 16.76 c.42.1.1 115264 1s1pA 331 17.70 c.1.7.1 98350 1lroA 267 17.96 c.1.10.4 78161 3c8nA 356 19.81 1a4mA 349 20.30 c.1.9.1 29014 1xwyA 264 20.51 c.1.9.12 122411 1zhaA 267 22.69 1tv8A 340 23.41 c.1.28.3 107352 5reqA 727 23.84 c.1.19.1,c.23.6.1 29632,31259 1fh9A 312 25.69 c.1.8.3 28913 1k6wA 426 26.24 b.92.1.2,c.1.9.5 68236,68237 1kl1A 419 26.49 c.67.1.4 72663 1xrsB 262 27.19 c.23.6.1,d.230.4.1 115884,115885 2depA 356 27.70 1rvkA 382 28.83 c.1.11.2,d.54.1.1 97928,97929 2pgfA 371 28.85 2abbA 364 29.22 c.1.4.1 126517 1ceo 343 29.51 2dr1A 386 29.60 2pp3A 398 30.49 1reqA 727 31.35 c.1.19.1,c.23.6.1 29620,31247 1d3gA 367 32.59 c.1.4.1 28600 1mdl 359 33.26 1vjzA 341 34.67 c.1.8.3 100838 2p10A 286 35.01 1m5wA 243 35.93 c.1.24.1 84836 1fkx 349 36.77 1im5A 180 36.84 c.33.1.3 66211 1v77A 212 37.65 c.6.3.2 108402 1uumA 372 37.82 c.1.4.1 100010 1aj2A 282 37.84 c.1.21.1 29665 1w1iE 357 38.57 c.1.9.1 109051 1zgdA 312 39.09 3ccgA 190 39.47 1ecxA 384 41.20 c.67.1.3 34431 2podA 410 41.56 2ragA 417 41.64 1tkkA 366 42.22 c.1.11.2,d.54.1.1 107089,107090 1vflA 356 42.51 c.1.9.1 120041 2obiA 183 43.68 1vd6A 224 43.92 c.1.18.3 119991 1a2zA 220 44.64 c.56.4.1 33794 1d1qA 161 44.69 c.44.1.1 32642 1nq6A 302 44.88 c.1.8.3 92046 3b40A 417 45.02 2rduA 387 45.25 1qtwA 285 46.71 c.1.15.1 29392 1aj2 282 47.57 2al1A 436 47.67 c.1.11.1,d.54.1.1 126949,126950 2o14A 375 47.85 1tif 78 49.23 1iu8A 206 49.63 c.56.4.1 71436 2hzgA 401 50.20 1bmtA 246 50.37 a.46.1.1,c.23.6.1 17757,31235 1yxyA 234 50.80 c.1.2.5 124203 1k77A 260 51.12 c.1.15.5 72096 1tx2A 297 51.95 c.1.21.1 107420 2qgyA 391 52.37 1ituA 369 52.52 c.1.9.7 71423 1vr6A 350 53.44 c.1.10.4 120439 3ciwA 348 55.18 1ii7A 333 55.45 d.159.1.4 62415 1v0lA 313 56.10 c.1.8.3 108207 2qw5A 335 57.04 1o1yA 239 57.32 c.23.16.1 86554 2hxtA 441 58.42 1kcxA 518 59.15 b.92.1.3,c.1.9.6 90953,90954 1oneA 436 59.58 c.1.11.1,d.54.1.1 29200,38844 3bjsA 428 60.22 1mdlA 359 60.37 c.1.11.2,d.54.1.1 29247,38891 1goxA 369 60.53 c.1.4.1 28607 1mi3A 322 60.96 c.1.7.1 91274 1f60A 458 62.09 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1ekxA 311 63.16 c.78.1.1,c.78.1.1 35088,35089 1qumA 285 63.48 c.1.15.1 29393 1z41A 338 64.08 c.1.4.1 124421 2og9A 393 64.94 1egzA 291 65.44 c.1.8.3 28828 1d0vA 356 65.77 c.39.1.1 32476 2al2A 436 67.89 c.1.11.1,d.54.1.1 126953,126954 1elqA 390 69.06 c.67.1.3 34436 1j96A 323 69.11 c.1.7.1 71616 1vjoA 393 69.21 c.67.1.3 100827 1pe1A 267 70.72 c.1.10.4 94591 2hyxA 352 71.26 2b81A 323 72.53 1r30A 369 73.24 c.1.28.1 96895 2gouA 365 73.39 2hk0A 309 75.25 2oczA 231 75.60 2amxA 376 75.81 c.1.9.1 127024 1o0yA 260 78.82 c.1.10.1 80756 1vbuA 328 78.87 c.1.8.3 119963 2o08A 188 79.54 1z57A 339 80.06 1hw6A 278 80.60 c.1.7.1 61296 2q8xA 331 80.96 1yt3A 375 81.91 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 2du2A 374 82.49 1yfsA 465 87.07 a.203.1.1,d.104.1.1 123088,123089 2jg2A 422 87.63 1nbaA 264 89.88 c.33.1.3 31753