# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.25e-25 1m65A 245 2.32e-13 c.6.3.1 84847 2anuA 255 7.74e-05 c.6.3.1 127058 2hnhA 910 0.003787 1yixA 265 0.3313 c.1.9.12 123371 1zzmA 259 0.5598 c.1.9.12 125911 1j6oA 268 1.052 c.1.9.12 77088 2qulA 290 1.161 2gzxA 265 1.182 2v5jA 287 1.834 2podA 410 4.264 1v77A 212 5.362 c.6.3.2 108402 3cnyA 301 5.843 1xwyA 264 6.545 c.1.9.12 122411 1a4mA 349 7.883 c.1.9.1 29014 2bp1A 360 7.906 2pgfA 371 8.193 1k6wA 426 9.804 b.92.1.2,c.1.9.5 68236,68237 2bgsA 344 11.80 2pozA 392 13.69 1zgdA 312 14.01 1vflA 356 16.28 c.1.9.1 120041 2hk0A 309 17.22 2oz8A 389 17.23 1s1pA 331 18.01 c.1.7.1 98350 2qgyA 391 18.01 2hzgA 401 18.24 1fkx 349 18.29 1q7zA 566 18.91 c.1.21.2,c.1.26.1 96090,96091 2o14A 375 19.34 1j2rA 199 20.18 c.33.1.3 90788 1d8wA 426 20.86 c.1.15.2 29394 1vjgA 218 21.35 c.23.10.6 100810 2jg1A 330 22.11 1k77A 260 22.26 c.1.15.5 72096 2og9A 393 22.33 2f02A 323 23.53 c.72.1.1 132649 2ajrA 331 23.61 c.72.1.1 126892 1mdl 359 24.00 1w1iE 357 24.07 c.1.9.1 109051 2nzlA 392 24.92 2fb2A 340 25.94 1ccwA 137 25.94 c.23.6.1 31238 1tv8A 340 26.59 c.1.28.3 107352 1mi3A 322 26.76 c.1.7.1 91274 2yxbA 161 27.05 1exbA 332 27.98 c.1.7.1 28666 1qumA 285 28.03 c.1.15.1 29393 1qtwA 285 29.06 c.1.15.1 29392 2pp3A 398 30.31 1tqjA 230 33.03 c.1.2.2 107228 1lqaA 346 33.12 c.1.7.1 84674 1dxeA 256 35.00 c.1.12.5 29310 1914 232 38.87 1nbaA 264 41.32 c.33.1.3 31753 1gveA 327 41.72 c.1.7.1 70597 2dr3A 247 42.55 1rpxA 230 43.47 c.1.2.2 28536 1aq0A 306 44.80 c.1.8.3 28842 2al1A 436 44.99 c.1.11.1,d.54.1.1 126949,126950 1iu8A 206 46.09 c.56.4.1 71436 2ao0A 324 47.19 1hw6A 278 48.01 c.1.7.1 61296 1gvfA 286 48.26 c.1.10.2 70599 1vixA 420 49.64 c.56.5.4,d.58.19.1 100777,100778 1u9iA 519 49.68 c.37.1.11,c.37.1.11 119637,119638 2amxA 376 49.84 c.1.9.1 127024 1zsxA 347 50.43 1qrqA 325 51.03 c.1.7.1 28667 1mdlA 359 51.38 c.1.11.2,d.54.1.1 29247,38891 2fliA 220 51.41 c.1.2.2 133714 1eyeA 280 51.68 c.1.21.1 29672 1p1xA 260 52.26 c.1.10.1 104060 1iukA 140 52.43 c.2.1.8 83712 2q8xA 331 52.70 1j96A 323 54.19 c.1.7.1 71616 1ekxA 311 55.67 c.78.1.1,c.78.1.1 35088,35089 1qcwA 410 55.89 c.1.4.1 28622 2hxtA 441 56.61 1gw9A 388 56.68 c.1.15.3 70658 1ra0A 430 58.16 b.92.1.2,c.1.9.5 111756,111757 2p0oA 372 59.01 1xrsB 262 59.44 c.23.6.1,d.230.4.1 115884,115885 1rhcA 330 59.99 c.1.16.3 97468 1oneA 436 61.13 c.1.11.1,d.54.1.1 29200,38844 2obiA 183 64.08 1ad4A 266 66.62 c.1.21.1 29670 1a2zA 220 66.80 c.56.4.1 33794 2h6rA 219 66.84 2i7gA 376 66.93 1dliA 402 67.06 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 3bjsA 428 68.24 1tkkA 366 69.18 c.1.11.2,d.54.1.1 107089,107090 1o0yA 260 69.32 c.1.10.1 80756 1kl1A 419 69.73 c.67.1.4 72663 1mzhA 225 70.65 c.1.10.1 79698 1rvkA 382 71.25 c.1.11.2,d.54.1.1 97928,97929 1qgoA 264 71.45 c.92.1.2 35596 2ggsA 273 72.49 1augA 215 73.17 c.56.4.1 33798 1frb 315 73.90 1uumA 372 74.25 c.1.4.1 100010 2ax4A 198 74.99 1de5A 426 75.89 c.1.15.2 29402 1vjoA 393 77.07 c.67.1.3 100827 2gwgA 350 77.41 c.1.9.15 135805 3c8nA 356 77.94 1tx2A 297 77.98 c.1.21.1 107420 4enl 436 78.15 2pz0A 252 78.76 1tzzA 392 79.20 c.1.11.2,d.54.1.1 112896,112897 1wohA 305 79.52 c.42.1.1 109446 1el3A 316 80.08 c.1.7.1 28672 1ezwA 349 80.57 c.1.16.3 29558 1ltdA 506 81.18 c.1.4.1,d.120.1.1 28618,41086 1volA 204 81.60 a.74.1.2,a.74.1.2 18370,18371 1w0mA 226 82.46 c.1.1.1 109027 2al2A 436 82.62 c.1.11.1,d.54.1.1 126953,126954 1jpdX 324 82.74 c.1.11.2,d.54.1.1 67014,67015 1jakA 512 82.83 c.1.8.6,d.92.2.1 66472,66473 3cz8A 319 83.11 1jcjA 260 83.46 c.1.10.1 66499 1ii7A 333 83.87 d.159.1.4 62415 1kyhA 276 84.86 c.72.1.4 73222 1ceo 343 86.04 1pz1A 333 86.92 c.1.7.1 95390 1ecxA 384 87.72 c.67.1.3 34431 2itbA 206 89.51