# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.44e-24 1m65A 245 3.58e-13 c.6.3.1 84847 2anuA 255 0.000151 c.6.3.1 127058 2hnhA 910 0.000571 2qulA 290 1.236 2v5jA 287 1.682 1j6oA 268 3.345 c.1.9.12 77088 1q7zA 566 4.419 c.1.21.2,c.1.26.1 96090,96091 1yixA 265 4.555 c.1.9.12 123371 1zzmA 259 4.638 c.1.9.12 125911 2fb2A 340 8.446 1k6wA 426 9.375 b.92.1.2,c.1.9.5 68236,68237 2gzxA 265 10.70 1ezwA 349 10.97 c.1.16.3 29558 2yxbA 161 11.26 1tv8A 340 12.17 c.1.28.3 107352 1ccwA 137 14.88 c.23.6.1 31238 3cnyA 301 15.04 2nzlA 392 15.29 1xfkA 336 20.64 c.42.1.1 115264 1a4mA 349 23.77 c.1.9.1 29014 1qumA 285 24.20 c.1.15.1 29393 1rhcA 330 24.23 c.1.16.3 97468 3c8nA 356 24.35 1vflA 356 26.18 c.1.9.1 120041 2i5gA 325 26.48 1ecxA 384 26.59 c.67.1.3 34431 2pgfA 371 27.72 1xwyA 264 28.16 c.1.9.12 122411 1f07A 321 28.48 c.1.16.3 59560 1kl1A 419 29.33 c.67.1.4 72663 1ceo 343 30.03 1ekxA 311 30.55 c.78.1.1,c.78.1.1 35088,35089 5reqA 727 31.95 c.1.19.1,c.23.6.1 29632,31259 2b81A 323 32.07 1s1pA 331 32.35 c.1.7.1 98350 1xrsB 262 34.33 c.23.6.1,d.230.4.1 115884,115885 2dr1A 386 34.49 1j2rA 199 34.73 c.33.1.3 90788 1qtwA 285 36.36 c.1.15.1 29392 1bmtA 246 37.55 a.46.1.1,c.23.6.1 17757,31235 1qdbA 473 38.26 a.138.1.3 19688 1yxyA 234 41.08 c.1.2.5 124203 2ragA 417 41.84 1tif 78 41.86 3ccgA 190 41.96 1zhaA 267 42.35 1fkx 349 42.36 1d3gA 367 46.31 c.1.4.1 28600 2obiA 183 46.51 1elqA 390 47.08 c.67.1.3 34436 1f60A 458 48.26 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1uumA 372 53.44 c.1.4.1 100010 1v77A 212 54.06 c.6.3.2 108402 1reqA 727 54.19 c.1.19.1,c.23.6.1 29620,31247 1acmA 310 56.13 c.78.1.1,c.78.1.1 35180,35181 1im5A 180 60.46 c.33.1.3 66211 2uzhA 165 61.42 2pp3A 398 61.61 2qw5A 335 61.85 1kcxA 518 61.86 b.92.1.3,c.1.9.6 90953,90954 2yxzA 311 63.41 1nbaA 264 67.73 c.33.1.3 31753 2amxA 376 70.91 c.1.9.1 127024 1zkpA 268 71.24 d.157.1.9 125205 1ituA 369 71.81 c.1.9.7 71423 8atcA 310 72.86 c.78.1.1,c.78.1.1 35132,35133 1nmoA 247 72.95 c.135.1.1 91980 1o1yA 239 77.98 c.23.16.1 86554 1w1iE 357 79.02 c.1.9.1 109051 2ajrA 331 79.73 c.72.1.1 126892 2hk0A 309 79.94 1fh9A 312 82.03 c.1.8.3 28913 1d8wA 426 82.38 c.1.15.2 29394 1h5vA 304 82.69 c.1.8.3 70898 2h09A 155 82.93 2al2A 436 85.63 c.1.11.1,d.54.1.1 126953,126954 1qwtA 255 85.80 b.26.1.3 96501 2p0oA 372 87.32 1j96A 323 87.74 c.1.7.1 71616 2i7gA 376 87.85 2podA 410 88.48 2p10A 286 88.79 1oc7A 364 89.35 c.6.1.1 86794 2fywA 267 89.95 c.135.1.1 134408