# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 7.45e-21 1m65A 245 4.48e-11 c.6.3.1 84847 2anuA 255 0.000310 c.6.3.1 127058 2hnhA 910 0.08530 1ecxA 384 0.5214 c.67.1.3 34431 2i5gA 325 0.9750 1yixA 265 2.117 c.1.9.12 123371 2dr1A 386 2.320 1uumA 372 2.458 c.1.4.1 100010 1q7zA 566 2.473 c.1.21.2,c.1.26.1 96090,96091 2qulA 290 2.504 1k6wA 426 3.020 b.92.1.2,c.1.9.5 68236,68237 1ceo 343 3.648 2ze0A 555 3.992 1rhcA 330 4.287 c.1.16.3 97468 2v5jA 287 4.309 1xfkA 336 4.390 c.42.1.1 115264 1eg5A 384 4.557 c.67.1.3 34429 1h5vA 304 4.698 c.1.8.3 70898 1j6oA 268 4.709 c.1.9.12 77088 2ragA 417 4.741 1ezwA 349 4.849 c.1.16.3 29558 3b40A 417 4.873 1zzmA 259 5.542 c.1.9.12 125911 1tv8A 340 6.078 c.1.28.3 107352 2podA 410 7.523 1gw9A 388 7.581 c.1.15.3 70658 1wkyA 464 7.867 b.18.1.31,c.1.8.3 120992,120993 3c8nA 356 8.065 2q8xA 331 8.083 1k77A 260 8.445 c.1.15.5 72096 1fcdA 401 8.878 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1goxA 369 9.058 c.1.4.1 28607 2nzlA 392 11.19 2citA 282 11.62 c.1.8.3 130499 2cw6A 298 11.74 1ituA 369 14.05 c.1.9.7 71423 1xwyA 264 14.71 c.1.9.12 122411 1f07A 321 14.96 c.1.16.3 59560 1a5mC 566 16.18 b.92.1.1,c.1.9.2 28423,29045 2yxbA 161 17.02 1rk6A 496 17.58 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1oneA 436 17.58 c.1.11.1,d.54.1.1 29200,38844 1ni4A 365 17.74 c.36.1.11 85728 2d1zA 436 19.81 2b81A 323 20.52 1j96A 323 20.63 c.1.7.1 71616 3b9oA 440 20.68 2gzxA 265 21.97 2al2A 436 22.32 c.1.11.1,d.54.1.1 126953,126954 2hx1A 284 23.25 1s1pA 331 23.97 c.1.7.1 98350 1bf6A 291 25.29 c.1.9.3 29065 1b1yA 500 25.33 c.1.8.1 28796 1kl1A 419 26.83 c.67.1.4 72663 1elqA 390 27.12 c.67.1.3 34436 1qumA 285 27.12 c.1.15.1 29393 1ub3A 220 29.48 c.1.10.1 88395 1ccwA 137 29.87 c.23.6.1 31238 1fkx 349 30.52 1ht6A 405 30.73 b.71.1.1,c.1.8.1 83629,83630 1ek6A 348 31.11 c.2.1.2 29800 2abbA 364 31.26 c.1.4.1 126517 2og9A 393 32.07 1iu8A 206 32.18 c.56.4.1 71436 1lucB 324 32.19 c.1.16.1 29548 1zunB 434 32.21 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2pa6A 427 32.81 2nydA 370 33.14 2depA 356 33.44 1edg 380 33.51 2jg2A 422 34.31 1d2eA 397 35.10 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1eu8A 409 37.46 c.94.1.1 59502 2rduA 387 37.70 2o56A 407 38.60 1muwA 386 39.13 c.1.15.3 79495 1m2kA 249 40.05 c.31.1.5 84754 1qmeA 702 40.41 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1i3kA 348 41.13 c.2.1.2 61595 2obiA 183 41.24 1m5wA 243 41.34 c.1.24.1 84836 1ed8A 449 41.65 c.76.1.1 34988 1bmtA 246 43.08 a.46.1.1,c.23.6.1 17757,31235 1aj2A 282 43.13 c.1.21.1 29665 4xiaA 393 44.60 c.1.15.3 29439 1vjpA 394 44.72 c.2.1.3,d.81.1.3 100828,100829 3pfk 319 46.43 1augA 215 47.33 c.56.4.1 33798 2iz6A 176 47.90 1ceoA 343 48.06 c.1.8.3 28808 3ch0A 272 49.27 1a0dA 440 49.32 c.1.15.3 29533 1eceA 358 49.34 c.1.8.3 28813 2rebA 352 49.99 c.37.1.11,d.48.1.1 32282,38767 2nx9A 464 50.11 1zy9A 564 50.91 b.30.5.11,c.1.8.13 125813,125814 1ra0A 430 51.07 b.92.1.2,c.1.9.5 111756,111757 1afsA 323 51.89 c.1.7.1 28694 1omp 370 53.63 1a4mA 349 53.73 c.1.9.1 29014 2du2A 374 54.03 1p1mA 406 54.32 b.92.1.4,c.1.9.9 87696,87697 2eplX 627 55.62 1v77A 212 56.09 c.6.3.2 108402 2f8aA 208 56.86 c.47.1.10 133119 1z45A 699 59.23 b.30.5.4,c.2.1.2 124427,124428 2b0mA 393 59.31 c.1.4.1 127644 1d8wA 426 62.29 c.1.15.2 29394 2hdyA 440 62.47 1ur1A 378 65.05 c.1.8.3 99804 1zjaA 557 66.65 1zhaA 267 67.09 1mdl 359 67.13 1rcuA 195 68.22 c.129.1.1 97295 1l5oA 356 69.42 c.39.1.1 77711 2f8lA 344 70.36 c.66.1.45 133132 1eyeA 280 70.50 c.1.21.1 29672 2fb2A 340 71.73 2h1yA 321 72.57 1aj2 282 72.82 3bjsA 428 73.05 3bc9A 599 73.69 2i2wA 212 74.12 1z57A 339 74.34 1o0yA 260 74.44 c.1.10.1 80756 1ydnA 295 75.91 1vd6A 224 76.18 c.1.18.3 119991 1us0A 316 76.20 c.1.7.1 99850 1wohA 305 76.82 c.42.1.1 109446 2qw5A 335 77.30 2p10A 286 79.55 1lroA 267 80.01 c.1.10.4 78161 1pfkA 320 81.16 c.89.1.1 35575 1hnnA 282 81.93 c.66.1.15 65895 1f60A 458 83.00 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1d3gA 367 83.56 c.1.4.1 28600 2hk0A 309 84.15 1xbtA 193 84.37 c.37.1.24,g.39.1.14 115080,115081 1j2rA 199 84.65 c.33.1.3 90788 2pgfA 371 85.77 1ho1A 242 86.01 c.1.24.1 61097 2j6vA 301 86.27 1odzA 386 87.57 c.1.8.3 86889 1egzA 291 87.73 c.1.8.3 28828 1tx2A 297 89.51 c.1.21.1 107420 1sflA 238 89.64 c.1.10.1 112077