# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	8.43e-24		
1m65A	245	8.85e-13	c.6.3.1	84847
2anuA	255	0.000298	c.6.3.1	127058
2hnhA	910	0.000592		
2qulA	290	1.149		
1j6oA	268	1.671	c.1.9.12	77088
2v5jA	287	2.018		
1zzmA	259	3.008	c.1.9.12	125911
1q7zA	566	3.643	c.1.21.2,c.1.26.1	96090,96091
1yixA	265	3.659	c.1.9.12	123371
2gzxA	265	8.957		
1ezwA	349	10.16	c.1.16.3	29558
1k6wA	426	10.70	b.92.1.2,c.1.9.5	68236,68237
2fb2A	340	11.55		
2yxbA	161	11.80		
2nzlA	392	12.17		
3cnyA	301	13.57		
1xfkA	336	14.85	c.42.1.1	115264
1rhcA	330	16.69	c.1.16.3	97468
2i5gA	325	17.08		
1tv8A	340	17.93	c.1.28.3	107352
1ccwA	137	19.06	c.23.6.1	31238
1ceo	343	19.25		
1ecxA	384	20.31	c.67.1.3	34431
1xwyA	264	20.85	c.1.9.12	122411
3c8nA	356	22.09		
1s1pA	331	24.09	c.1.7.1	98350
1qumA	285	26.41	c.1.15.1	29393
1qtwA	285	26.51	c.1.15.1	29392
1ekxA	311	28.00	c.78.1.1,c.78.1.1	35088,35089
1xrsB	262	29.57	c.23.6.1,d.230.4.1	115884,115885
2b81A	323	33.46		
1f07A	321	33.71	c.1.16.3	59560
5reqA	727	33.77	c.1.19.1,c.23.6.1	29632,31259
1zhaA	267	33.78		
1kcxA	518	34.20	b.92.1.3,c.1.9.6	90953,90954
1a4mA	349	34.24	c.1.9.1	29014
1qdbA	473	34.46	a.138.1.3	19688
2ragA	417	36.11		
1j2rA	199	37.23	c.33.1.3	90788
1f60A	458	39.43	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
2obiA	183	40.68		
1tif	78	41.09		
1qwtA	255	48.20	b.26.1.3	96501
1im5A	180	49.41	c.33.1.3	66211
1h5vA	304	49.82	c.1.8.3	70898
2pgfA	371	49.98		
1ituA	369	50.03	c.1.9.7	71423
1kl1A	419	50.35	c.67.1.4	72663
1bmtA	246	51.07	a.46.1.1,c.23.6.1	17757,31235
2pp3A	398	51.29		
3ccgA	190	51.30		
1reqA	727	51.39	c.1.19.1,c.23.6.1	29620,31247
2oczA	231	53.17		
1acmA	310	53.87	c.78.1.1,c.78.1.1	35180,35181
2dr1A	386	54.78		
1yxyA	234	54.86	c.1.2.5	124203
1tx2A	297	55.33	c.1.21.1	107420
8atcA	310	56.02	c.78.1.1,c.78.1.1	35132,35133
1uumA	372	58.87	c.1.4.1	100010
1d3gA	367	61.21	c.1.4.1	28600
1vflA	356	63.08	c.1.9.1	120041
1lroA	267	63.11	c.1.10.4	78161
1aj2A	282	63.54	c.1.21.1	29665
1g0cA	364	65.62	c.1.8.3	60165
1fkx	349	66.16		
2p10A	286	66.35		
1zkpA	268	70.20	d.157.1.9	125205
1nbaA	264	71.81	c.33.1.3	31753
1elqA	390	72.86	c.67.1.3	34436
2gwgA	350	77.17	c.1.9.15	135805
1oc7A	364	77.94	c.6.1.1	86794
2qw5A	335	79.79		
2yxzA	311	79.84		
1v77A	212	80.27	c.6.3.2	108402
1mi3A	322	82.01	c.1.7.1	91274
1j96A	323	83.70	c.1.7.1	71616
1eceA	358	84.30	c.1.8.3	28813
1nmoA	247	87.13	c.135.1.1	91980
1sxjA	511	88.08	a.80.1.1,c.37.1.20	106081,106082
2hk0A	309	88.23		
2jg2A	422	88.82