# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	1.05e-22		
1m65A	245	6.86e-12	c.6.3.1	84847
2anuA	255	0.000236	c.6.3.1	127058
2hnhA	910	0.000932		
2qulA	290	5.343		
1j6oA	268	6.016	c.1.9.12	77088
1zzmA	259	7.403	c.1.9.12	125911
2v5jA	287	11.33		
1q7zA	566	11.79	c.1.21.2,c.1.26.1	96090,96091
1rhcA	330	14.75	c.1.16.3	97468
1elqA	390	15.94	c.67.1.3	34436
1yixA	265	17.21	c.1.9.12	123371
2pgfA	371	19.25		
1ceo	343	19.93		
2dr1A	386	20.29		
1qdbA	473	20.69	a.138.1.3	19688
2i5gA	325	20.89		
1w1iE	357	22.52	c.1.9.1	109051
2fb2A	340	23.72		
2nzlA	392	25.18		
1vflA	356	25.31	c.1.9.1	120041
1k6wA	426	26.23	b.92.1.2,c.1.9.5	68236,68237
1ezwA	349	26.52	c.1.16.3	29558
1fkx	349	26.86		
1a4mA	349	27.87	c.1.9.1	29014
1be1	137	31.79		
1ccwA	137	32.25	c.23.6.1	31238
1s1pA	331	32.61	c.1.7.1	98350
1r30A	369	34.34	c.1.28.1	96895
3cnyA	301	38.19		
3c8nA	356	38.58		
2yxbA	161	39.21		
1vjoA	393	39.72	c.67.1.3	100827
1j2rA	199	40.28	c.33.1.3	90788
2ragA	417	41.57		
1tv8A	340	48.49	c.1.28.3	107352
1kcxA	518	48.64	b.92.1.3,c.1.9.6	90953,90954
1mi3A	322	48.77	c.1.7.1	91274
1sxjA	511	54.09	a.80.1.1,c.37.1.20	106081,106082
1d8wA	426	54.16	c.1.15.2	29394
2b81A	323	59.45		
2hk0A	309	60.49		
1byuA	216	60.85	c.37.1.8	32032
1xrsB	262	61.44	c.23.6.1,d.230.4.1	115884,115885
2gzxA	265	64.65		
1tif	78	64.76		
1f60A	458	65.03	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
1aj2A	282	65.44	c.1.21.1	29665
2obiA	183	65.53		
1o1yA	239	65.54	c.23.16.1	86554
1aj2	282	67.55		
1qtwA	285	68.05	c.1.15.1	29392
2rc5A	314	71.10		
2oczA	231	71.76		
1kl1A	419	73.77	c.67.1.4	72663
1ituA	369	74.15	c.1.9.7	71423
1ekxA	311	75.41	c.78.1.1,c.78.1.1	35088,35089
1k77A	260	77.48	c.1.15.5	72096
1zgdA	312	78.37		
2amxA	376	80.46	c.1.9.1	127024
1fh9A	312	81.07	c.1.8.3	28913
2f8aA	208	83.52	c.47.1.10	133119
1vd6A	224	87.32	c.1.18.3	119991
1rk6A	496	88.85	b.92.1.6,b.92.1.6,c.1.9.11	97599,97600,97601
1ecxA	384	89.51	c.67.1.3	34431