# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	2.31e-25		
1m65A	245	3.20e-13	c.6.3.1	84847
2anuA	255	6.57e-05	c.6.3.1	127058
2hnhA	910	0.000237		
2qulA	290	2.167		
1j6oA	268	2.937	c.1.9.12	77088
1zzmA	259	3.826	c.1.9.12	125911
2v5jA	287	4.319		
1yixA	265	9.558	c.1.9.12	123371
1q7zA	566	12.14	c.1.21.2,c.1.26.1	96090,96091
2yxbA	161	13.06		
1ezwA	349	14.42	c.1.16.3	29558
2i5gA	325	15.11		
1ccwA	137	16.92	c.23.6.1	31238
1j2rA	199	18.84	c.33.1.3	90788
1k6wA	426	19.02	b.92.1.2,c.1.9.5	68236,68237
1rhcA	330	19.11	c.1.16.3	97468
1qdbA	473	20.50	a.138.1.3	19688
2fb2A	340	21.06		
3cnyA	301	24.10		
1xrsB	262	25.48	c.23.6.1,d.230.4.1	115884,115885
1vflA	356	26.19	c.1.9.1	120041
2pgfA	371	30.44		
1ceo	343	31.36		
1be1	137	32.14		
1tif	78	32.81		
1a4mA	349	33.70	c.1.9.1	29014
2nzlA	392	34.00		
1tv8A	340	34.37	c.1.28.3	107352
2dr1A	386	34.50		
1kcxA	518	35.74	b.92.1.3,c.1.9.6	90953,90954
2podA	410	36.44		
3ccgA	190	37.62		
1ekxA	311	37.63	c.78.1.1,c.78.1.1	35088,35089
1vjoA	393	40.69	c.67.1.3	100827
2obiA	183	40.98		
3c8nA	356	41.47		
1d0vA	356	42.27	c.39.1.1	32476
1r30A	369	43.43	c.1.28.1	96895
1d1qA	161	44.67	c.44.1.1	32642
2gzxA	265	45.67		
1w1iE	357	46.08	c.1.9.1	109051
1fkx	349	46.28		
2pp3A	398	53.64		
1sxjA	511	58.48	a.80.1.1,c.37.1.20	106081,106082
2hxoA	237	58.70		
1fh9A	312	64.62	c.1.8.3	28913
5reqA	727	64.79	c.1.19.1,c.23.6.1	29632,31259
1im5A	180	69.67	c.33.1.3	66211
1qwtA	255	73.92	b.26.1.3	96501
1aj2A	282	74.28	c.1.21.1	29665
2hyxA	352	75.24		
1o94A	729	76.37	c.1.4.1,c.3.1.1,c.4.1.1	81200,81201,81202
1z57A	339	76.56		
1tifA	78	77.04	d.15.8.1	37836
1qumA	285	77.66	c.1.15.1	29393
1o1yA	239	77.66	c.23.16.1	86554
1tx2A	297	78.55	c.1.21.1	107420
1qtwA	285	78.99	c.1.15.1	29392
2ragA	417	79.38		
1d3gA	367	81.20	c.1.4.1	28600
1eceA	358	81.52	c.1.8.3	28813
1f60A	458	82.29	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
1zhaA	267	82.91		
1k77A	260	83.33	c.1.15.5	72096
1v0lA	313	83.85	c.1.8.3	108207
1aj2	282	84.07		
1d8wA	426	88.05	c.1.15.2	29394
1ad4A	266	88.34	c.1.21.1	29670