# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	9.39e-23		
1m65A	245	4.47e-12	c.6.3.1	84847
2anuA	255	0.000266	c.6.3.1	127058
2hnhA	910	0.000777		
1j6oA	268	2.362	c.1.9.12	77088
1zzmA	259	3.638	c.1.9.12	125911
2qulA	290	4.393		
2v5jA	287	5.609		
1q7zA	566	9.069	c.1.21.2,c.1.26.1	96090,96091
1yixA	265	11.35	c.1.9.12	123371
1r30A	369	15.20	c.1.28.1	96895
1rhcA	330	17.21	c.1.16.3	97468
1ccwA	137	19.48	c.23.6.1	31238
2fb2A	340	20.22		
2yxbA	161	21.64		
2nzlA	392	21.95		
1j2rA	199	22.69	c.33.1.3	90788
1qdbA	473	24.04	a.138.1.3	19688
2gzxA	265	26.33		
2pgfA	371	27.68		
2i5gA	325	27.76		
1ezwA	349	29.11	c.1.16.3	29558
1k6wA	426	33.10	b.92.1.2,c.1.9.5	68236,68237
3cnyA	301	37.01		
1elqA	390	40.46	c.67.1.3	34436
1vflA	356	41.32	c.1.9.1	120041
1tif	78	42.55		
1tv8A	340	43.38	c.1.28.3	107352
3c8nA	356	43.83		
1be1	137	44.95		
1sxjA	511	45.55	a.80.1.1,c.37.1.20	106081,106082
1ceo	343	46.15		
1kl1A	419	46.96	c.67.1.4	72663
1vjoA	393	47.12	c.67.1.3	100827
2obiA	183	48.05		
1kcxA	518	52.53	b.92.1.3,c.1.9.6	90953,90954
2dr1A	386	52.56		
1ekxA	311	57.02	c.78.1.1,c.78.1.1	35088,35089
1s1pA	331	57.60	c.1.7.1	98350
1d1qA	161	60.55	c.44.1.1	32642
1aj2A	282	61.21	c.1.21.1	29665
1i7qB	193	61.52	c.23.16.1	61902
2pp3A	398	62.54		
1xrsB	262	63.30	c.23.6.1,d.230.4.1	115884,115885
3ccgA	190	63.69		
1m5wA	243	63.94	c.1.24.1	84836
1a4mA	349	63.99	c.1.9.1	29014
1im5A	180	65.44	c.33.1.3	66211
1d8wA	426	69.73	c.1.15.2	29394
2b81A	323	70.00		
1z41A	338	70.17	c.1.4.1	124421
1qumA	285	71.89	c.1.15.1	29393
1d0vA	356	72.69	c.39.1.1	32476
5reqA	727	72.82	c.1.19.1,c.23.6.1	29632,31259
1aj2	282	72.91		
1ituA	369	73.75	c.1.9.7	71423
1g0cA	364	77.31	c.1.8.3	60165
2hk0A	309	77.95		
2amxA	376	78.34	c.1.9.1	127024
1o1yA	239	79.60	c.23.16.1	86554
1yxyA	234	81.69	c.1.2.5	124203
1qtwA	285	81.81	c.1.15.1	29392
1fkx	349	82.16		
1k77A	260	82.40	c.1.15.5	72096
2ragA	417	83.45		
2i7gA	376	84.10		
1yfsA	465	85.71	a.203.1.1,d.104.1.1	123088,123089
1fh9A	312	86.80	c.1.8.3	28913
1zgdA	312	87.01		
2podA	410	88.44		
2hxoA	237	88.47		
2btdA	210	88.94		
2hyxA	352	89.36		
1z57A	339	89.51