# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.89e-24 1m65A 245 1.25e-13 c.6.3.1 84847 2anuA 255 0.000210 c.6.3.1 127058 2hnhA 910 0.000589 2qulA 290 1.415 1zzmA 259 2.662 c.1.9.12 125911 1j6oA 268 3.085 c.1.9.12 77088 1yixA 265 3.927 c.1.9.12 123371 1qumA 285 4.005 c.1.15.1 29393 1fh9A 312 4.704 c.1.8.3 28913 2gzxA 265 4.896 2pgfA 371 8.199 1tz9A 367 9.336 c.1.15.6 107466 2hk0A 309 10.10 2podA 410 10.51 2o14A 375 11.00 1zgdA 312 11.08 1k77A 260 11.20 c.1.15.5 72096 2i5gA 325 11.81 2ajrA 331 11.82 c.72.1.1 126892 1i60A 278 12.01 c.1.15.4 71118 2v5jA 287 12.33 2jg1A 330 12.74 1xwyA 264 14.35 c.1.9.12 122411 1vflA 356 14.64 c.1.9.1 120041 1nq6A 302 14.88 c.1.8.3 92046 2ragA 417 15.74 3cnyA 301 17.30 1ccwA 137 17.57 c.23.6.1 31238 1a4mA 349 17.65 c.1.9.1 29014 2f02A 323 18.58 c.72.1.1 132649 1xyzA 347 20.43 c.1.8.3 28804 2pozA 392 21.91 2fb2A 340 24.18 1fkx 349 24.66 2yxbA 161 24.89 2obiA 183 25.17 2bgsA 344 26.99 1w1iE 357 28.95 c.1.9.1 109051 1v77A 212 29.49 c.6.3.2 108402 1lqaA 346 29.88 c.1.7.1 84674 1d8wA 426 30.83 c.1.15.2 29394 2ao0A 324 33.21 2ggsA 273 33.72 1v0lA 313 33.73 c.1.8.3 108207 1k6wA 426 33.83 b.92.1.2,c.1.9.5 68236,68237 2z1nA 260 34.85 1vbuA 328 35.79 c.1.8.3 119963 2dr3A 247 36.75 1exbA 332 37.12 c.1.7.1 28666 1ii7A 333 37.18 d.159.1.4 62415 1j2rA 199 37.57 c.33.1.3 90788 1qrqA 325 42.10 c.1.7.1 28667 2q0dA 353 42.37 2hejA 323 42.45 2pp3A 398 42.75 1vjgA 218 43.67 c.23.10.6 100810 1a0dA 440 46.09 c.1.15.3 29533 2gwgA 350 46.14 c.1.9.15 135805 1eq2A 310 46.26 c.2.1.2 29814 1v2dA 381 47.23 c.67.1.1 108281 1s1pA 331 47.66 c.1.7.1 98350 3b40A 417 49.09 3buvA 326 51.31 1rhcA 330 51.86 c.1.16.3 97468 1tv8A 340 52.46 c.1.28.3 107352 1hw6A 278 52.89 c.1.7.1 61296 1uteA 313 53.00 d.159.1.1 42078 1im5A 180 53.13 c.33.1.3 66211 1lt8A 406 53.16 c.1.26.1 78186 2amxA 376 53.64 c.1.9.1 127024 2og9A 393 54.10 1qtwA 285 55.11 c.1.15.1 29392 1j96A 323 55.31 c.1.7.1 71616 1yxyA 234 58.64 c.1.2.5 124203 2bvwA 362 58.91 c.6.1.1 30666 2oz8A 389 60.04 1oltA 457 60.94 c.1.28.2 93334 2bp1A 360 61.65 1q7zA 566 61.67 c.1.21.2,c.1.26.1 96090,96091 1xyfA 436 61.88 b.42.2.1,c.1.8.3 25577,28909 2qgyA 391 63.42 5reqA 727 65.83 c.1.19.1,c.23.6.1 29632,31259 2q8xA 331 66.56 1eljA 381 67.57 c.94.1.1 35791 1s8eA 333 68.81 d.159.1.4 105368 2vc7A 314 71.52 1fds 327 72.27 2d1zA 436 73.70 1mdlA 359 73.76 c.1.11.2,d.54.1.1 29247,38891 1vbjA 281 73.94 1p4cA 380 75.42 c.1.4.1 94100 1gvfA 286 76.16 c.1.10.2 70599 2fg1A 158 76.26 c.50.1.2 133400 2rebA 352 76.64 c.37.1.11,d.48.1.1 32282,38767 1tk9A 188 77.58 c.80.1.3 107082 1u9iA 519 79.18 c.37.1.11,c.37.1.11 119637,119638 2i2wA 212 79.41 1ur1A 378 81.03 c.1.8.3 99804 1iu8A 206 81.81 c.56.4.1 71436 2dh2A 424 82.19 1yb1A 272 83.92 c.2.1.2 116599 1h1yA 228 85.83 c.1.2.2 76506 2g37A 327 87.73 1vm6A 228 89.40 d.81.1.3,c.2.1.3 108877,118631