# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.60e-27 1m65A 245 1.78e-14 c.6.3.1 84847 2hnhA 910 6.76e-05 2anuA 255 0.000141 c.6.3.1 127058 2qulA 290 0.1536 1yixA 265 0.8818 c.1.9.12 123371 1j6oA 268 1.034 c.1.9.12 77088 1zzmA 259 1.196 c.1.9.12 125911 1k6wA 426 1.649 b.92.1.2,c.1.9.5 68236,68237 2gzxA 265 2.175 3cnyA 301 3.960 1qumA 285 4.515 c.1.15.1 29393 3b40A 417 5.205 1k77A 260 5.235 c.1.15.5 72096 2pgfA 371 5.680 1fh9A 312 5.847 c.1.8.3 28913 1qtwA 285 6.189 c.1.15.1 29392 2fb2A 340 6.513 2ragA 417 6.612 2i5gA 325 6.646 2hk0A 309 9.757 1vflA 356 10.02 c.1.9.1 120041 1v77A 212 10.31 c.6.3.2 108402 2podA 410 11.01 2yxbA 161 11.39 1i60A 278 11.40 c.1.15.4 71118 1xwyA 264 12.77 c.1.9.12 122411 2v5jA 287 13.84 1s1pA 331 14.16 c.1.7.1 98350 1a4mA 349 15.60 c.1.9.1 29014 2o14A 375 15.75 1qcwA 410 15.88 c.1.4.1 28622 1ccwA 137 18.05 c.23.6.1 31238 1tv8A 340 19.22 c.1.28.3 107352 1eq2A 310 20.24 c.2.1.2 29814 1zgdA 312 20.68 2i2xB 258 20.82 1j2rA 199 21.01 c.33.1.3 90788 1nq6A 302 21.08 c.1.8.3 92046 1ituA 369 21.52 c.1.9.7 71423 1fkx 349 21.60 1j96A 323 21.81 c.1.7.1 71616 1eljA 381 22.76 c.94.1.1 35791 2obiA 183 25.86 1p4cA 380 26.02 c.1.4.1 94100 1vjgA 218 26.55 c.23.10.6 100810 1d8wA 426 26.58 c.1.15.2 29394 1zhaA 267 27.87 1oltA 457 28.70 c.1.28.2 93334 1exbA 332 29.78 c.1.7.1 28666 2jg1A 330 30.20 2gdjA 264 30.20 c.37.1.11 135018 2dr3A 247 30.30 1h1yA 228 30.40 c.1.2.2 76506 2gwgA 350 30.89 c.1.9.15 135805 2iswA 323 31.89 2hejA 323 33.23 1oc7A 364 33.60 c.6.1.1 86794 1lqaA 346 33.88 c.1.7.1 84674 2vc7A 314 34.77 1w1iE 357 35.06 c.1.9.1 109051 1tx2A 297 35.91 c.1.21.1 107420 1ra0A 430 36.07 b.92.1.2,c.1.9.5 111756,111757 2qgyA 391 36.88 1augA 215 37.75 c.56.4.1 33798 3c8nA 356 38.53 1vjoA 393 40.12 c.67.1.3 100827 4xiaA 393 40.38 c.1.15.3 29439 2amxA 376 41.44 c.1.9.1 127024 2ajrA 331 41.57 c.72.1.1 126892 1mdl 359 42.00 1y80A 210 42.67 2b81A 323 42.96 2gokA 429 43.93 1frb 315 43.96 1iu8A 206 44.43 c.56.4.1 71436 2oz8A 389 44.54 2bvwA 362 45.08 c.6.1.1 30666 1ii7A 333 45.16 d.159.1.4 62415 1q7zA 566 47.59 c.1.21.2,c.1.26.1 96090,96091 2pp3A 398 51.56 1goxA 369 51.80 c.1.4.1 28607 2i1qA 322 52.03 a.60.4.1,c.37.1.11 136984,136985 3buvA 326 53.52 1jubA 311 53.79 c.1.4.1 90908 1a2zA 220 55.08 c.56.4.1 33794 2iucA 375 55.35 1gw9A 388 56.58 c.1.15.3 70658 1dysA 348 57.42 c.6.1.1 30669 1vr6A 350 57.43 c.1.10.4 120439 1be1 137 57.97 1eyeA 280 58.49 c.1.21.1 29672 1im5A 180 59.12 c.33.1.3 66211 4kbpA 432 59.23 b.1.12.1,d.159.1.1 22345,42064 1wohA 305 59.34 c.42.1.1 109446 1p1mA 406 59.39 b.92.1.4,c.1.9.9 87696,87697 1qrqA 325 59.74 c.1.7.1 28667 1rk6A 496 60.68 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1xfkA 336 60.76 c.42.1.1 115264 2pozA 392 60.98 2rebA 352 62.76 c.37.1.11,d.48.1.1 32282,38767 1vbuA 328 62.95 c.1.8.3 119963 1j6pA 418 63.66 b.92.1.4,c.1.9.9 77089,77090 1qgoA 264 64.07 c.92.1.2 35596 1qwkA 317 64.50 c.1.7.1 96482 1xrsB 262 64.55 c.23.6.1,d.230.4.1 115884,115885 1v72A 356 65.76 c.67.1.1 119860 2dorA 311 66.39 c.1.4.1 28593 2q8xA 331 67.18 2nzlA 392 68.06 2bgsA 344 68.95 1mdlA 359 70.27 c.1.11.2,d.54.1.1 29247,38891 1oroA 213 70.41 c.61.1.1 34093 5reqA 727 70.96 c.1.19.1,c.23.6.1 29632,31259 1xviA 275 72.25 c.108.1.10 116088 1afsA 323 73.72 c.1.7.1 28694 1h49A 512 75.08 c.1.8.4 83477 2c7pA 327 75.35 c.66.1.26 130080 2f02A 323 75.86 c.72.1.1 132649 1ur1A 378 76.54 c.1.8.3 99804 2f6kA 307 76.86 c.1.9.15 133047 2djlA 314 77.21 2og9A 393 77.33 1r30A 369 77.50 c.1.28.1 96895 2al2A 436 77.63 c.1.11.1,d.54.1.1 126953,126954 2e6fA 314 77.67 2z1nA 260 77.87 1t94A 459 78.83 d.240.1.1,e.8.1.7 106701,106702 1tz9A 367 78.89 c.1.15.6 107466 1lroA 267 79.52 c.1.10.4 78161 2bp1A 360 80.39 2a5hA 416 82.18 1bvwA 360 82.46 c.6.1.1 30668 1bf6A 291 82.81 c.1.9.3 29065 1el3A 316 82.84 c.1.7.1 28672 1fds 327 84.57 2cbiA 594 85.06 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 1dfoA 417 86.70 c.67.1.4 34480 1g55A 343 87.11 c.66.1.26 34247 1t71A 281 87.20 d.159.1.9 112283 1gvfA 286 87.90 c.1.10.2 70599 1m6iA 493 88.18 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1gveA 327 88.35 c.1.7.1 70597 1ltdA 506 88.96 c.1.4.1,d.120.1.1 28618,41086 1aj2A 282 89.02 c.1.21.1 29665