# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.43e-09 1m65A 245 0.000155 c.6.3.1 84847 2anuA 255 0.5034 c.6.3.1 127058 2q8xA 331 2.524 2hnhA 910 3.673 1n82A 331 4.115 c.1.8.3 91703 1fkx 349 5.265 2podA 410 7.397 1a4mA 349 9.235 c.1.9.1 29014 1itcA 516 10.01 b.3.1.1,c.1.8.1 83705,83706 2qw5A 335 10.01 2h8zA 359 10.44 1w1iE 357 10.94 c.1.9.1 109051 16pk 415 11.15 16pkA 415 11.95 c.86.1.1 35454 1yixA 265 12.09 c.1.9.12 123371 2depA 356 12.11 1ceo 343 13.13 1v77A 212 13.33 c.6.3.2 108402 2o55A 258 13.44 2q02A 272 13.88 1he2A 206 14.20 c.2.1.2 60966 1hdoA 206 14.53 c.2.1.2 60965 1i3kA 348 15.27 c.2.1.2 61595 1hdiA 413 15.29 c.86.1.1 60964 2gokA 429 16.64 1ek6A 348 17.41 c.2.1.2 29800 1v0lA 313 17.60 c.1.8.3 108207 1b9zA 516 17.98 b.3.1.1,c.1.8.1 22528,28798 1ur1A 378 18.40 c.1.8.3 99804 1ituA 369 19.16 c.1.9.7 71423 2hzgA 401 19.76 1w5nA 337 20.40 2bp1A 360 20.62 4xiaA 393 21.52 c.1.15.3 29439 1sjdA 368 21.80 c.1.11.2,d.54.1.1 105632,105633 1sb8A 352 22.05 c.2.1.2 105410 3be7A 408 23.06 2qt3A 403 23.28 1vflA 356 23.34 c.1.9.1 120041 2cduA 452 23.41 1xwyA 264 23.63 c.1.9.12 122411 1xel 338 23.83 2oo6A 409 25.18 1t2aA 375 25.45 c.2.1.2 99078 2q09A 416 25.52 1wdpA 495 25.67 c.1.8.1 120907 1p4cA 380 25.80 c.1.4.1 94100 1a0cA 438 26.15 c.1.15.3 29529 1ho1A 242 26.59 c.1.24.1 61097 1twdA 256 26.79 c.1.30.1 107397 1ub3A 220 26.79 c.1.10.1 88395 1b4kA 337 27.15 c.1.10.3 29184 2amxA 376 27.19 c.1.9.1 127024 2oz8A 389 27.45 1h5yA 253 27.54 c.1.2.1 65638 2exxA 306 27.74 1w5qA 337 27.78 1ads 315 28.08 1xyfA 436 28.33 b.42.2.1,c.1.8.3 25577,28909 1rpnA 335 28.79 c.2.1.2 97708 1gzgA 337 29.18 c.1.10.3 70805 1ra0A 430 29.35 b.92.1.2,c.1.9.5 111756,111757 1vd6A 224 29.42 c.1.18.3 119991 1jakA 512 29.43 c.1.8.6,d.92.2.1 66472,66473 1lqaA 346 29.53 c.1.7.1 84674 1yxyA 234 30.01 c.1.2.5 124203 2p10A 286 30.32 1xyzA 347 30.35 c.1.8.3 28804 2gasA 307 31.60 1gveA 327 31.80 c.1.7.1 70597 2hejA 323 32.56 1frb 315 32.57 1qycA 308 32.89 c.2.1.2 96581 1qo2A 241 32.94 c.1.2.1 28533 1j96A 323 32.96 c.1.7.1 71616 1r85A 379 33.79 c.1.8.3 104839 2agtA 319 34.43 1ohlA 342 34.44 c.1.10.3 87035 1v6sA 390 34.49 c.86.1.1 100424 1udcA 338 34.55 c.2.1.2 29785 2fb2A 340 34.96 1tv8A 340 34.99 c.1.28.3 107352 1us0A 316 35.31 c.1.7.1 99850 1b4eA 323 35.53 c.1.10.3 29186 3b40A 417 35.99 1vemA 516 36.21 b.3.1.1,c.1.8.1 120021,120022 1hp4A 512 36.38 c.1.8.6,d.92.2.1 61111,61112 2qs8A 418 36.96 1z41A 338 37.18 c.1.4.1 124421 1qydA 313 37.49 c.2.1.2 96583 1v3hA 495 38.37 c.1.8.1 108303 3c1oA 321 38.43 2gdqA 382 38.44 c.1.11.2,d.54.1.1 135020,135021 1ylvA 342 38.85 c.1.10.3 29180 2cunA 410 40.24 2cw6A 298 40.26 2p5yA 311 40.41 1nq6A 302 40.66 c.1.8.3 92046 1phpA 394 40.81 c.86.1.1 35452 1k6wA 426 40.94 b.92.1.2,c.1.9.5 68236,68237 2pozA 392 41.29 1vcvA 226 41.44 c.1.10.1 119988 1mi3A 322 42.36 c.1.7.1 91274 1edg 380 42.59 2zc8A 369 43.57 1l6sA 323 43.64 c.1.10.3 73627 2bogX 286 44.03 1s1pA 331 44.05 c.1.7.1 98350 3cjpA 272 44.39 1nhsA 447 44.41 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2d1zA 436 45.08 2jepA 395 45.50 1dxeA 256 45.78 c.1.12.5 29310 1ad4A 266 46.16 c.1.21.1 29670 1yhtA 367 46.64 c.1.8.6 123213 1zzmA 259 47.33 c.1.9.12 125911 1ceoA 343 47.88 c.1.8.3 28808 1o94A 729 48.35 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2bodX 286 48.79 c.6.1.1 128909 1nhpA 447 49.15 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2a1fA 247 49.63 c.73.1.3 125991 2pgfA 371 49.76 1vliA 385 50.49 b.85.1.1,c.1.10.6 108830,108831 1wkyA 464 51.15 b.18.1.31,c.1.8.3 120992,120993 1ps9A 671 51.79 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1goxA 369 52.17 c.1.4.1 28607 1n57A 291 52.25 c.23.16.2 85328 1bf6A 291 52.57 c.1.9.3 29065 2ojpA 292 53.20 2zadA 345 53.33 7odcA 424 53.59 b.49.2.3,c.1.6.1 26488,28650 1dhpA 292 54.00 c.1.10.1 29097 1l6rA 227 54.32 c.108.1.10 77768 1db3A 372 54.68 c.2.1.2 29813 2hk0A 309 54.77 1qcwA 410 54.82 c.1.4.1 28622 2bneA 241 55.80 c.73.1.3 128824 1r7aA 504 56.94 b.71.1.1,c.1.8.1 97192,97193 2bgsA 344 57.12 2b3zA 373 57.13 c.71.1.2,c.97.1.2 127807,127808 1qrrA 394 57.68 c.2.1.2 29824 1afsA 323 58.27 c.1.7.1 28694 3clwA 507 58.30 1g0cA 364 58.32 c.1.8.3 60165 1ybdA 239 58.54 c.73.1.3 122884 1r0mA 375 58.81 c.1.11.2,d.54.1.1 104747,104748 2pz0A 252 59.03 1jubA 311 59.14 c.1.4.1 90908 1tb3A 352 59.15 c.1.4.1 119205 1tkkA 366 59.68 c.1.11.2,d.54.1.1 107089,107090 1uozA 315 59.74 c.6.1.1 113354 1xq6A 253 59.74 c.2.1.2 115829 1edgA 380 60.08 c.1.8.3 28807 2rduA 387 60.48 1vbuA 328 60.60 c.1.8.3 119963 1w32A 348 60.74 c.1.8.3 114120 1n7kA 234 60.75 c.1.10.1 85374 1yb1A 272 60.83 c.2.1.2 116599 2v5jA 287 61.17 1aq0A 306 61.21 c.1.8.3 28842 1b1yA 500 61.39 c.1.8.1 28796 2p8bA 369 61.57 1gkpA 458 62.31 b.92.1.3,c.1.9.6 70231,70232 2ox4A 403 62.92 1e7rA 321 63.44 c.2.1.2 29808 1gw9A 388 63.61 c.1.15.3 70658 2dqwA 294 63.73 2gduA 504 63.92 b.71.1.1,c.1.8.1 135032,135033 2ovlA 371 64.51 1avaA 403 64.72 b.71.1.1,c.1.8.1 27797,28784 1xgkA 352 65.12 c.2.1.2 115286 1k1xA 659 65.13 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1o1zA 234 65.24 c.1.18.3 86555 2tmdA 729 65.95 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 2i5gA 325 66.71 1bwsA 321 66.96 c.2.1.2 29812 1bsvA 321 67.80 c.2.1.2 29809 1ad1A 266 68.25 c.1.21.1 29668 2agkA 260 68.55 1zgdA 312 68.90 1n7hA 381 68.98 c.2.1.2 80250 2pzmA 330 71.25 2olsA 794 72.24 2z1mA 345 72.25 2vefA 314 72.66 2ao0A 324 73.01 1kbjA 412 73.14 c.1.4.1 72280 2purA 292 73.31 2bllA 345 73.80 c.2.1.2 128733 2atsA 292 74.06 c.1.10.1 127306 1a0eA 443 74.19 c.1.15.3 29537 1el3A 316 74.51 c.1.7.1 28672 1jcjA 260 74.93 c.1.10.1 66499 1e6uA 321 75.00 c.2.1.2 29805 1m5wA 243 75.26 c.1.24.1 84836 1ghsA 306 75.38 c.1.8.3 28840 1qumA 285 75.49 c.1.15.1 29393 1a0dA 440 76.46 c.1.15.3 29533 2nliA 368 76.47 2h1vA 310 76.66 1rvkA 382 77.14 c.1.11.2,d.54.1.1 97928,97929 2c29D 337 77.67 1oc2A 348 77.89 c.2.1.2 92765 1qtwA 285 78.53 c.1.15.1 29392 2qiwA 255 78.73 1ktbA 405 78.87 b.71.1.1,c.1.8.1 72960,72961 1byb 495 78.94 1d9eA 284 80.15 c.1.10.4 29195 1i24A 404 80.31 c.2.1.2 83663 1ht6A 405 80.79 b.71.1.1,c.1.8.1 83629,83630 2pgwA 384 80.85 2q46A 253 81.10 c.2.1.2 139825 2a6nA 292 81.35 c.1.10.1 126289 1bqcA 302 81.41 c.1.8.3 28831 2r91A 286 81.42 2gwgA 350 81.47 c.1.9.15 135805 1djqA 729 81.54 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2rdxA 379 81.66 2pgeA 377 81.80 1jndA 420 81.81 c.1.8.5,d.26.3.1 71757,71758 1nowA 507 82.49 c.1.8.6,d.92.2.1 85936,85937 2e7jA 371 82.65 2ftwA 521 82.76 b.92.1.3,c.1.9.6 134083,134084 2fr1A 486 82.89 c.2.1.2,c.2.1.2 133961,133962 3buvA 326 83.03 2a35A 215 83.15 c.2.1.2 126072 1vjrA 271 83.29 c.108.1.14 100832 2f9iA 327 84.17 1muwA 386 85.01 c.1.15.3 79495 1qgoA 264 85.25 c.92.1.2 35596 2hxvA 360 85.32 c.71.1.2,c.97.1.2 136859,136860 1iciA 256 86.79 c.31.1.5 62266 1tz9A 367 86.86 c.1.15.6 107466 1xuuA 349 87.07 b.85.1.1,c.1.10.6 116067,116068 2a6lA 292 88.09 c.1.10.1 126285 3xis 387 88.34 1erzA 303 89.00 d.160.1.2 59498 3ct2A 382 89.22 1ak1 310 89.36 1vjzA 341 89.88 c.1.8.3 100838