Best Alignments for T0440

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2yxoA	2.1897e-19	2yxoA/T0440-2yxoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1m65A	2.1707e-14	1m65A/T0440-1m65A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2anuA	5.6148e-13	2anuA/T0440-2anuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2hnhA	4.8273e-09	2hnhA/T0440-2hnhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v77A	4.5698e-07	1v77A/T0440-1v77A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.2
2ffiA	3.3064e-01	2ffiA/T0440-2ffiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.15
1vflA	4.4140e-01	1vflA/T0440-1vflA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
2qahA	4.6299e-01	2qahA/T0440-2qahA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j6oA	4.6646e-01	1j6oA/T0440-1j6oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1i60A	5.4276e-01	1i60A/T0440-1i60A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.15.4
2pajA	5.6318e-01	2pajA/T0440-2pajA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gokA	8.3923e-01	2gokA/T0440-2gokA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2icsA	9.7533e-01	2icsA/T0440-2icsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.92.1.8 c.1.9.14
2vc7A	1.0708e+00	2vc7A/T0440-2vc7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gzxA	1.0762e+00	2gzxA/T0440-2gzxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g3fA	1.1902e+00	2g3fA/T0440-2g3fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ybqB	1.3414e+00	1ybqB/T0440-1ybqB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ob3A	1.4229e+00	2ob3A/T0440-2ob3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zzmA	1.6093e+00	1zzmA/T0440-1zzmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1gkrA	1.8370e+00	1gkrA/T0440-1gkrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.92.1.3 c.1.9.6

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001