# List of top-scoring protein chains for T0440.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.72e-22 1m65A 245 1.14e-19 c.6.3.1 84847 2hpiA 1220 5.30e-10 2anuA 255 3.43e-09 c.6.3.1 127058 2hqaA 917 1.44e-06 2hnhA 910 1.52e-06 2p1jA 186 0.03200 1zzmA 259 0.4483 c.1.9.12 125911 1fkxA 349 2.209 c.1.9.1 29018 2a4aA 281 2.427 c.1.10.1 126150 1z69A 327 2.606 1a4mA 349 2.976 c.1.9.1 29014 2adaA 352 3.044 c.1.9.1 29027 1fkwA 349 3.256 c.1.9.1 29019 1uipA 349 3.938 c.1.9.1 29022 1f07A 321 3.944 c.1.16.3 59560 1uioA 349 3.947 c.1.9.1 29021 3cjpA 272 4.937 1zq1A 438 5.481 b.38.3.1,c.88.1.1 125489,125490 3bdmF 287 6.750 1z7qG 288 6.843 d.153.1.4 124654 1ezwA 349 6.904 c.1.16.3 29558 1rypG 244 7.752 d.153.1.4 41938 2ogjA 417 7.822 2bgnE 363 8.344 c.1.9.1 128492 1vflA 356 8.413 c.1.9.1 120041 1w1iE 357 8.413 c.1.9.1 109051 1qxlA 356 8.421 c.1.9.1 104644 1g0uF 248 8.527 d.153.1.4 41951 2h3hA 313 13.54 1ho1A 242 14.85 c.1.24.1 61097 1m5wA 243 14.87 c.1.24.1 84836 2egzA 219 14.88 1wg8A 285 15.03 a.60.13.1,c.66.1.23 114605,114606 1iruD 248 16.16 d.153.1.4 71355 1ck4A 198 16.47 c.62.1.1 34149 1m53A 570 21.08 b.71.1.1,c.1.8.1 84805,84806 1i74A 309 21.28 c.107.1.1 61867 2enxA 310 21.50 1t3lA 337 22.59 b.34.2.1,c.37.1.1 106358,106359 1j2pA 246 22.80 d.153.1.4 84022 2pgfA 371 23.48 2gzxA 265 24.59 1j2qA 237 26.46 d.153.1.4 84029 1gynA 358 26.83 c.1.10.2 83385 1sa3A 262 27.58 c.52.1.23 105400 3c9fA 557 32.15 2amxA 376 33.62 c.1.9.1 127024 1bkjA 240 34.03 d.90.1.1 40243 2vhlA 396 34.32 1pffA 331 34.58 c.67.1.3 104143 2nloA 302 37.02 1x0mA 403 37.69 c.67.1.1 121550 1wppA 311 39.12 c.107.1.1 114828 2pifA 276 39.40 1o1zA 234 39.88 c.1.18.3 86555 2pz0A 252 40.93 1dosA 358 41.25 c.1.10.2 29175 2uy8A 385 41.40 2b2xA 223 41.73 c.62.1.1 127748 1k20A 310 44.96 c.107.1.1 68027 1fqeA 331 45.18 c.94.1.2 59988 2viaA 405 47.15 1mhpA 192 47.60 c.62.1.1 84965 2uy9A 385 48.81 1sjdA 368 48.86 c.1.11.2,d.54.1.1 105632,105633 2uyaA 383 51.11 2v09A 385 51.24 1j58A 385 51.26 b.82.1.2 71531 1sm9A 322 51.66 c.1.7.1 112100 2qygA 452 52.03 1u0lA 301 52.51 b.40.4.5,c.37.1.8 107551,107552 2rkxA 255 53.92 2rdbA 498 54.23 2p4qA 497 54.37 1ua4A 455 54.63 c.72.1.3 99128 2uybA 385 56.13 2vguA 407 56.94 2pk0A 250 62.81 1t0qA 498 63.51 a.25.1.2 106220 1rhcA 330 65.13 c.1.16.3 97468 2p0oA 372 65.64 1kl1A 419 68.48 c.67.1.4 72663 1dbtA 239 73.04 c.1.2.3 28539 1n7kA 234 73.13 c.1.10.1 85374 2ragA 417 75.26 1jsxA 207 75.48 c.66.1.20 71846 1tkkA 366 78.02 c.1.11.2,d.54.1.1 107089,107090 1t5iA 172 78.49 c.37.1.19 106450 1yixA 265 79.91 c.1.9.12 123371 1aoaA 275 81.43 a.40.1.1,a.40.1.1 17396,17397 1zxmA 400 81.65 1yqdA 366 83.90 2incA 491 84.46 a.25.1.2 137524 1womA 271 86.57 2v6iA 431 86.94 2etjA 250 87.14 c.55.3.1 132360