# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.32e-13 1m65A 245 2.48e-10 c.6.3.1 84847 2anuA 255 1.59e-08 c.6.3.1 127058 2hnhA 910 1.11e-05 1v77A 212 2.73e-05 c.6.3.2 108402 2qahA 303 0.8330 1j6oA 268 1.350 c.1.9.12 77088 1i60A 278 1.556 c.1.15.4 71118 2ffiA 288 2.059 c.1.9.15 133385 2gzxA 265 2.682 2vc7A 314 2.922 2ob3A 330 2.966 2opjA 327 2.983 1vflA 356 3.423 c.1.9.1 120041 2gokA 429 4.201 1ybqB 390 4.259 1qtwA 285 4.267 c.1.15.1 29392 2pajA 492 4.444 2q02A 272 4.644 1xwyA 264 4.778 c.1.9.12 122411 2qt3A 403 5.228 1gkrA 458 6.002 b.92.1.3,c.1.9.6 70251,70252 1yw1A 442 6.141 c.1.16.4 124130 2icsA 379 6.446 b.92.1.8,c.1.9.14 137241,137242 2b81A 323 7.025 2qw5A 335 7.029 1zzmA 259 7.830 c.1.9.12 125911 1zgdA 312 7.960 2fb2A 340 8.804 3cnyA 301 9.194 1gkpA 458 10.52 b.92.1.3,c.1.9.6 70231,70232 1vbjA 281 10.57 1k77A 260 11.50 c.1.15.5 72096 1a0cA 438 11.62 c.1.15.3 29529 1hw6A 278 11.78 c.1.7.1 61296 1tv8A 340 12.17 c.1.28.3 107352 3brqA 296 13.90 1f07A 321 14.13 c.1.16.3 59560 2z00A 426 14.16 2pceA 386 14.97 1tvlA 454 15.01 c.1.16.4 107366 1o0yA 260 15.08 c.1.10.1 80756 2g0wA 296 15.08 c.1.15.4 134503 2g3fA 421 15.45 1us0A 316 16.30 c.1.7.1 99850 1yixA 265 16.63 c.1.9.12 123371 2nqlA 388 17.02 2i7gA 376 19.15 1yacA 208 19.43 c.33.1.3 31757 1n7kA 234 19.50 c.1.10.1 85374 1frb 315 19.85 2i57A 438 19.99 7odcA 424 20.16 b.49.2.3,c.1.6.1 26488,28650 3bofA 566 20.29 1f6yA 262 21.06 c.1.21.2 29673 1j96A 323 21.21 c.1.7.1 71616 1a0dA 440 21.37 c.1.15.3 29533 1zp4A 304 21.42 1muwA 386 21.81 c.1.15.3 79495 2cygA 312 22.55 c.1.8.3 131025 1zuaX 317 22.95 1s1pA 331 23.17 c.1.7.1 98350 1rvkA 382 23.26 c.1.11.2,d.54.1.1 97928,97929 2hk0A 309 23.33 2hejA 323 23.59 3b9oA 440 23.61 3c86A 328 24.35 1i0dA 332 24.73 c.1.9.3 61487 3ce9A 354 25.36 1rhcA 330 25.89 c.1.16.3 97468 3be7A 408 26.00 2q09A 416 26.59 1toaA 313 27.46 c.92.2.2 35598 1q7zA 566 27.92 c.1.21.2,c.1.26.1 96090,96091 1v0lA 313 28.36 c.1.8.3 108207 1mi3A 322 28.39 c.1.7.1 91274 1qwkA 317 28.39 c.1.7.1 96482 3ciwA 348 29.15 1rk6A 496 29.98 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1aq0A 306 30.35 c.1.8.3 28842 1k92A 455 31.10 c.26.2.1,d.210.1.1 68325,68326 2ps2A 371 32.54 1wx0A 223 32.63 c.1.10.1 121382 1vbuA 328 34.93 c.1.8.3 119963 1k0fA 277 36.95 c.92.2.2 71974 2qulA 290 37.62 2puzA 419 37.68 1gveA 327 37.76 c.1.7.1 70597 1oj7A 408 37.86 e.22.1.2 103971 2depA 356 37.86 1ur3M 319 38.15 c.1.7.1 99806 3c8nA 356 38.81 2bgsA 344 40.08 1yeyA 444 41.16 c.1.11.2,d.54.1.1 116664,116665 1vc4A 254 41.31 c.1.2.4 100557 2nlyA 245 42.02 c.6.2.7 138364 2b34A 199 42.41 1lqaA 346 42.49 c.1.7.1 84674 1qgoA 264 44.00 c.92.1.2 35596 1vcvA 226 44.46 c.1.10.1 119988 1kbjA 412 45.32 c.1.4.1 72280 1ezwA 349 45.54 c.1.16.3 29558 1kfcA 268 45.96 c.1.2.4 77371 1tjyA 316 46.19 c.93.1.1 107062 2pmqA 377 48.62 1ra0A 430 48.69 b.92.1.2,c.1.9.5 111756,111757 1rrmA 386 50.22 e.22.1.2 105081 1mdl 359 50.71 1r85A 379 51.30 c.1.8.3 104839 2rdxA 379 51.33 1gqnA 252 53.61 c.1.10.1 90514 1g5bA 221 53.96 d.159.1.3 60261 2qdeA 397 55.35 2qq5A 260 56.14 2imrA 420 58.35 2ogyA 262 59.26 1nqkA 381 59.59 c.1.16.4 92050 1bg4A 302 61.75 c.1.8.3 28806 2gwnA 452 61.98 2qv5A 261 62.09 1w8sA 263 62.15 c.1.10.1 120744 1xfcA 384 62.55 2p8bA 369 63.65 2hbjA 410 63.66 a.60.8.4,c.55.3.5 136311,136312 2hneA 436 64.53 1ynpA 317 64.59 1o2dA 371 66.17 e.22.1.2 86591 2o55A 258 66.26 2pljA 419 66.89 2pgfA 371 67.21 1zjjA 263 68.17 2ao0A 324 69.65 1xyzA 347 70.51 c.1.8.3 28804 2a0nA 265 70.55 c.1.2.1 125961 2pp3A 398 70.83 1thfD 253 71.57 c.1.2.1 28535 1ta3B 303 72.10 c.1.8.3 106732 1qo2A 241 73.62 c.1.2.1 28533 1xrtA 467 75.29 b.92.1.3,c.1.9.6 122258,122259 1ujpA 271 75.42 c.1.2.4 99462 2vhlA 396 78.40 1o1zA 234 79.19 c.1.18.3 86555 1v93A 296 80.06 c.1.23.1 100532 2fvkA 559 81.63 b.92.1.3,c.1.9.6 134204,134205 1ur4A 399 82.06 c.1.8.3 113402 2f96A 224 82.24 c.55.3.5 133153 3ct2A 382 82.83 2q8xA 331 83.06 2e7fA 262 83.58 2a5hA 416 85.06 1xbyA 216 85.07 c.1.2.3 121846 1l6sA 323 88.02 c.1.10.3 73627 2hqbA 296 88.21 2nxfA 322 89.04 2fliA 220 89.25 c.1.2.2 133714