# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.00e-14 1m65A 245 2.72e-11 c.6.3.1 84847 2anuA 255 2.41e-09 c.6.3.1 127058 2hnhA 910 1.93e-06 1v77A 212 6.97e-06 c.6.3.2 108402 2qahA 303 0.5779 1j6oA 268 1.249 c.1.9.12 77088 2ffiA 288 1.479 c.1.9.15 133385 2gokA 429 1.984 1i60A 278 2.127 c.1.15.4 71118 2ob3A 330 2.273 2vc7A 314 2.935 1ybqB 390 3.601 1vflA 356 4.148 c.1.9.1 120041 1gkrA 458 4.199 b.92.1.3,c.1.9.6 70251,70252 1qtwA 285 4.217 c.1.15.1 29392 2gzxA 265 5.612 2qt3A 403 5.660 2pajA 492 5.794 1gkpA 458 6.264 b.92.1.3,c.1.9.6 70231,70232 1zzmA 259 6.358 c.1.9.12 125911 3cnyA 301 7.032 2icsA 379 7.041 b.92.1.8,c.1.9.14 137241,137242 1yw1A 442 7.146 c.1.16.4 124130 2q02A 272 7.760 2hk0A 309 8.080 2opjA 327 8.399 2fb2A 340 8.674 1zgdA 312 8.721 2qw5A 335 8.862 1a0cA 438 9.024 c.1.15.3 29529 2g3fA 421 9.218 1hw6A 278 10.61 c.1.7.1 61296 2z00A 426 10.75 3brqA 296 11.11 1k77A 260 11.41 c.1.15.5 72096 3cjpA 272 12.10 1f07A 321 12.29 c.1.16.3 59560 1vbjA 281 12.35 1o0yA 260 12.42 c.1.10.1 80756 1xwyA 264 12.75 c.1.9.12 122411 1zp4A 304 14.08 2i7gA 376 14.48 2b81A 323 14.56 1tv8A 340 14.73 c.1.28.3 107352 2g0wA 296 14.73 c.1.15.4 134503 1a0dA 440 14.94 c.1.15.3 29533 2q09A 416 16.80 2cygA 312 16.88 c.1.8.3 131025 1tvlA 454 17.39 c.1.16.4 107366 1rhcA 330 17.64 c.1.16.3 97468 1yacA 208 18.52 c.33.1.3 31757 1k92A 455 18.75 c.26.2.1,d.210.1.1 68325,68326 2i57A 438 19.71 1yixA 265 20.00 c.1.9.12 123371 1s1pA 331 20.23 c.1.7.1 98350 1f6yA 262 21.95 c.1.21.2 29673 2qulA 290 22.23 1j96A 323 22.42 c.1.7.1 71616 1rk6A 496 22.46 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1n7kA 234 23.78 c.1.10.1 85374 3be7A 408 24.52 7odcA 424 24.97 b.49.2.3,c.1.6.1 26488,28650 2depA 356 25.00 1us0A 316 25.95 c.1.7.1 99850 3ce9A 354 26.96 1zuaX 317 27.69 1frb 315 28.78 3b9oA 440 29.08 3ciwA 348 29.50 1rvkA 382 29.74 c.1.11.2,d.54.1.1 97928,97929 2hejA 323 30.14 1i0dA 332 30.76 c.1.9.3 61487 2puzA 419 30.77 1ra0A 430 33.35 b.92.1.2,c.1.9.5 111756,111757 1vbuA 328 33.64 c.1.8.3 119963 3c86A 328 34.30 1tjyA 316 35.31 c.93.1.1 107062 1vc4A 254 35.35 c.1.2.4 100557 2pceA 386 36.27 2nqlA 388 36.68 2bgsA 344 36.96 1xyzA 347 37.16 c.1.8.3 28804 1muwA 386 38.29 c.1.15.3 79495 1mi3A 322 38.52 c.1.7.1 91274 1v0lA 313 38.65 c.1.8.3 108207 1oj7A 408 40.38 e.22.1.2 103971 1qwkA 317 43.20 c.1.7.1 96482 1ur4A 399 43.83 c.1.8.3 113402 1ur3M 319 44.53 c.1.7.1 99806 2nlyA 245 44.70 c.6.2.7 138364 2q8xA 331 44.90 1lqaA 346 45.09 c.1.7.1 84674 2b34A 199 45.11 1r85A 379 45.78 c.1.8.3 104839 2qv5A 261 45.89 3bofA 566 45.95 1k0fA 277 46.52 c.92.2.2 71974 3c8nA 356 47.47 1toaA 313 47.54 c.92.2.2 35598 1vl2A 421 47.63 c.26.2.1,d.210.1.1 108708,108709 1gqnA 252 47.75 c.1.10.1 90514 1vcvA 226 50.30 c.1.10.1 119988 1kbjA 412 50.87 c.1.4.1 72280 2hbjA 410 51.60 a.60.8.4,c.55.3.5 136311,136312 1korA 400 52.03 c.26.2.1,d.210.1.1 72824,72825 1g5bA 221 53.00 d.159.1.3 60261 2pz0A 252 54.08 1qgoA 264 55.35 c.92.1.2 35596 2pg3A 232 56.68 1aq0A 306 57.26 c.1.8.3 28842 2fvkA 559 57.45 b.92.1.3,c.1.9.6 134204,134205 2ogyA 262 58.78 1kfcA 268 59.56 c.1.2.4 77371 1o2dA 371 60.92 e.22.1.2 86591 2pljA 419 64.10 2aamA 309 64.40 c.1.8.15 126489 2imrA 420 64.52 1gveA 327 65.91 c.1.7.1 70597 1nqkA 381 65.95 c.1.16.4 92050 1kbpA 432 66.00 b.1.12.1,d.159.1.1 22349,42068 1n82A 331 66.43 c.1.8.3 91703 3buvA 326 67.00 1ynpA 317 68.97 1w5qA 337 69.92 2o55A 258 70.46 1ezwA 349 71.81 c.1.16.3 29558 1thfD 253 72.21 c.1.2.1 28535 2a5hA 416 72.78 2e7fA 262 73.10 1l6sA 323 73.75 c.1.10.3 73627 2h1vA 310 74.10 2ps2A 371 75.03 1w8sA 263 75.31 c.1.10.1 120744 2agkA 260 75.47 1jq5A 370 75.47 e.22.1.2 67084 1v93A 296 76.35 c.1.23.1 100532 1tk9A 188 78.27 c.80.1.3 107082 1bg4A 302 79.14 c.1.8.3 28806 1xngA 268 80.92 c.26.2.1 122186 1wx0A 223 81.43 c.1.10.1 121382 1q7zA 566 82.79 c.1.21.2,c.1.26.1 96090,96091 2vhlA 396 84.39 1o12A 376 85.62 b.92.1.5,c.1.9.10 80758,80759 1fobA 334 86.49 c.1.8.3 83255 2qghA 425 87.75 2qq5A 260 88.64 1twiA 434 89.43 b.49.2.3,c.1.6.1 107399,107400 2hbvA 334 89.96 c.1.9.15 136320