# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.45e-13 1m65A 245 4.48e-10 c.6.3.1 84847 2anuA 255 2.08e-08 c.6.3.1 127058 2hnhA 910 1.33e-05 1v77A 212 6.80e-05 c.6.3.2 108402 2ffiA 288 0.9937 c.1.9.15 133385 1j6oA 268 1.074 c.1.9.12 77088 1i60A 278 1.227 c.1.15.4 71118 1vflA 356 1.719 c.1.9.1 120041 1zzmA 259 2.440 c.1.9.12 125911 2ob3A 330 2.934 2vc7A 314 3.196 2opjA 327 3.219 1k77A 260 3.782 c.1.15.5 72096 2gokA 429 3.792 1gkpA 458 3.837 b.92.1.3,c.1.9.6 70231,70232 1qtwA 285 4.131 c.1.15.1 29392 2qahA 303 4.283 1gkrA 458 4.444 b.92.1.3,c.1.9.6 70251,70252 2gzxA 265 5.083 2qt3A 403 5.851 2q02A 272 5.993 1zgdA 312 6.171 1xwyA 264 6.324 c.1.9.12 122411 1yixA 265 7.178 c.1.9.12 123371 1hw6A 278 7.763 c.1.7.1 61296 2g0wA 296 8.303 c.1.15.4 134503 1yw1A 442 9.361 c.1.16.4 124130 1zp4A 304 11.22 3cnyA 301 11.59 1f07A 321 11.77 c.1.16.3 59560 1vbjA 281 11.88 2hk0A 309 12.53 2qw5A 335 12.98 3brqA 296 13.71 1us0A 316 13.79 c.1.7.1 99850 1tvlA 454 13.84 c.1.16.4 107366 1a0cA 438 13.93 c.1.15.3 29529 1rvkA 382 14.29 c.1.11.2,d.54.1.1 97928,97929 1j96A 323 15.46 c.1.7.1 71616 2q09A 416 15.56 3c86A 328 16.02 1n7kA 234 16.20 c.1.10.1 85374 1muwA 386 17.06 c.1.15.3 79495 1tv8A 340 17.65 c.1.28.3 107352 1s1pA 331 17.87 c.1.7.1 98350 1ybqB 390 18.13 2qulA 290 18.25 2fb2A 340 18.26 1gveA 327 18.33 c.1.7.1 70597 2g3fA 421 18.59 1frb 315 19.43 2b81A 323 20.31 2z00A 426 20.50 2icsA 379 20.88 b.92.1.8,c.1.9.14 137241,137242 1zuaX 317 20.97 1i0dA 332 21.65 c.1.9.3 61487 1lqaA 346 21.83 c.1.7.1 84674 1o0yA 260 22.16 c.1.10.1 80756 3ciwA 348 22.30 2hejA 323 22.93 1qwkA 317 24.16 c.1.7.1 96482 1mi3A 322 24.34 c.1.7.1 91274 2cygA 312 25.77 c.1.8.3 131025 2qdeA 397 25.94 2i7gA 376 26.92 2puzA 419 27.50 1a0dA 440 27.80 c.1.15.3 29533 2pgfA 371 28.58 2nqlA 388 28.59 1nqkA 381 29.80 c.1.16.4 92050 7odcA 424 29.86 b.49.2.3,c.1.6.1 26488,28650 2cftA 298 31.89 2pajA 492 32.37 1v93A 296 32.74 c.1.23.1 100532 1bf6A 291 33.16 c.1.9.3 29065 3ce9A 354 33.22 1f6yA 262 33.91 c.1.21.2 29673 2i57A 438 34.00 2nlyA 245 34.35 c.6.2.7 138364 1ynpA 317 34.64 1rk6A 496 35.47 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1ur3M 319 37.43 c.1.7.1 99806 1yacA 208 37.64 c.33.1.3 31757 2ps2A 371 38.00 2pceA 386 38.20 1vcvA 226 39.08 c.1.10.1 119988 3bofA 566 39.11 1zjjA 263 39.12 1o12A 376 41.39 b.92.1.5,c.1.9.10 80758,80759 1wx0A 223 41.76 c.1.10.1 121382 3b9oA 440 44.23 3be7A 408 46.27 1aq0A 306 46.88 c.1.8.3 28842 1gqnA 252 48.59 c.1.10.1 90514 2qv5A 261 48.71 2gl5A 410 48.87 c.1.11.2,d.54.1.1 135336,135337 3buvA 326 50.12 1k92A 455 51.18 c.26.2.1,d.210.1.1 68325,68326 1tjyA 316 51.53 c.93.1.1 107062 1m5wA 243 52.11 c.1.24.1 84836 2fvkA 559 52.35 b.92.1.3,c.1.9.6 134204,134205 1v5xA 203 53.22 c.1.2.4 100377 1q7zA 566 53.60 c.1.21.2,c.1.26.1 96090,96091 1yeyA 444 53.70 c.1.11.2,d.54.1.1 116664,116665 1kfcA 268 54.58 c.1.2.4 77371 1lucA 355 54.70 c.1.16.1 29547 2hqbA 296 57.66 1ra0A 430 58.35 b.92.1.2,c.1.9.5 111756,111757 2fcaA 213 60.53 c.66.1.53 133262 1vc4A 254 62.92 c.1.2.4 100557 2ogyA 262 63.48 2dri 271 63.50 2b34A 199 65.28 1rrmA 386 66.04 e.22.1.2 105081 2jc5A 259 66.05 2d5rA 252 66.28 1o2dA 371 66.46 e.22.1.2 86591 1bg4A 302 67.04 c.1.8.3 28806 2p8bA 369 69.22 2depA 356 70.87 1qgoA 264 71.85 c.92.1.2 35596 1xrtA 467 72.90 b.92.1.3,c.1.9.6 122258,122259 1thfD 253 73.05 c.1.2.1 28535 1yx1A 264 74.93 c.1.15.7 124169 1gz0A 253 76.05 c.116.1.1,d.79.3.3 76391,76392 1knwA 425 76.66 b.49.2.3,c.1.6.1 90969,90970 2pmqA 377 77.11 2bgsA 344 78.21 2q01A 497 78.64 1xfcA 384 78.80 1oj7A 408 79.84 e.22.1.2 103971 2hx1A 284 80.21 2hneA 436 80.23 1twiA 434 81.26 b.49.2.3,c.1.6.1 107399,107400 2a0nA 265 81.49 c.1.2.1 125961 2e7fA 262 83.46 2vhlA 396 84.55 1arsA 396 85.22 c.67.1.1 34287 1ezwA 349 85.48 c.1.16.3 29558 1wviA 257 86.66 c.108.1.14 114915 2fepA 289 87.00 2pljA 419 87.67 2p3eA 420 88.41 1l6sA 323 88.54 c.1.10.3 73627 2qu7A 288 88.60 3chvA 284 89.52