# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 7.68e-16 1m65A 245 7.88e-12 c.6.3.1 84847 2anuA 255 5.67e-10 c.6.3.1 127058 1v77A 212 1.36e-06 c.6.3.2 108402 2hnhA 910 3.06e-06 1j6oA 268 0.6833 c.1.9.12 77088 2qahA 303 1.040 1i60A 278 1.186 c.1.15.4 71118 2gzxA 265 1.515 1qtwA 285 1.879 c.1.15.1 29392 2ob3A 330 1.893 2vc7A 314 2.103 1xwyA 264 2.865 c.1.9.12 122411 2ffiA 288 2.995 c.1.9.15 133385 1ybqB 390 3.873 2pajA 492 4.180 2opjA 327 4.293 1vflA 356 4.778 c.1.9.1 120041 1vbjA 281 4.890 1zzmA 259 4.943 c.1.9.12 125911 2gokA 429 5.135 1yw1A 442 6.180 c.1.16.4 124130 1a0dA 440 7.322 c.1.15.3 29533 2qw5A 335 7.458 1zp4A 304 7.913 2q02A 272 8.114 3brqA 296 8.149 1gkrA 458 8.171 b.92.1.3,c.1.9.6 70251,70252 1hw6A 278 8.691 c.1.7.1 61296 1a0cA 438 9.180 c.1.15.3 29529 3c86A 328 9.391 3cnyA 301 9.542 1o0yA 260 10.05 c.1.10.1 80756 1zgdA 312 10.67 1k77A 260 10.80 c.1.15.5 72096 2i7gA 376 11.54 2icsA 379 12.13 b.92.1.8,c.1.9.14 137241,137242 1tvlA 454 12.22 c.1.16.4 107366 1gkpA 458 13.37 b.92.1.3,c.1.9.6 70231,70232 2b81A 323 13.37 2g3fA 421 13.52 1f07A 321 13.95 c.1.16.3 59560 1g5bA 221 14.60 d.159.1.3 60261 2fb2A 340 15.52 1j96A 323 15.57 c.1.7.1 71616 1mi3A 322 17.21 c.1.7.1 91274 2qt3A 403 19.29 1yixA 265 19.69 c.1.9.12 123371 1tv8A 340 20.14 c.1.28.3 107352 1us0A 316 21.02 c.1.7.1 99850 1muwA 386 21.76 c.1.15.3 79495 1zuaX 317 22.32 1nqkA 381 22.50 c.1.16.4 92050 1rhcA 330 23.62 c.1.16.3 97468 2z00A 426 24.32 1wx0A 223 24.54 c.1.10.1 121382 3be7A 408 25.07 2pceA 386 25.11 2nqlA 388 25.15 1frb 315 25.32 1qwkA 317 25.34 c.1.7.1 96482 2bgsA 344 25.36 7odcA 424 26.19 b.49.2.3,c.1.6.1 26488,28650 1yacA 208 26.30 c.33.1.3 31757 1q7zA 566 26.65 c.1.21.2,c.1.26.1 96090,96091 1f6yA 262 26.65 c.1.21.2 29673 2hejA 323 27.38 1k92A 455 28.11 c.26.2.1,d.210.1.1 68325,68326 2g0wA 296 28.41 c.1.15.4 134503 1ezwA 349 29.37 c.1.16.3 29558 1s1pA 331 30.63 c.1.7.1 98350 2q09A 416 30.82 2cygA 312 30.85 c.1.8.3 131025 2cftA 298 31.33 1gveA 327 31.52 c.1.7.1 70597 2qulA 290 31.84 1oj7A 408 33.86 e.22.1.2 103971 1rvkA 382 34.74 c.1.11.2,d.54.1.1 97928,97929 2qdeA 397 34.85 3ce9A 354 36.81 1gqnA 252 37.10 c.1.10.1 90514 2hk0A 309 37.62 2depA 356 38.20 3ciwA 348 38.84 2i57A 438 39.21 1toaA 313 41.47 c.92.2.2 35598 2q8xA 331 43.38 1v93A 296 45.42 c.1.23.1 100532 2ps2A 371 47.29 2d5rA 252 48.34 1twiA 434 48.67 b.49.2.3,c.1.6.1 107399,107400 1ur3M 319 49.27 c.1.7.1 99806 1n7kA 234 50.92 c.1.10.1 85374 1o2dA 371 52.97 e.22.1.2 86591 2qv5A 261 54.57 2nlyA 245 54.91 c.6.2.7 138364 3bofA 566 56.33 2puzA 419 56.65 1vbuA 328 57.94 c.1.8.3 119963 1v0lA 313 58.16 c.1.8.3 108207 1tjyA 316 58.37 c.93.1.1 107062 1kbjA 412 58.44 c.1.4.1 72280 3b9oA 440 59.62 2p3eA 420 62.09 1k0fA 277 62.55 c.92.2.2 71974 1xbyA 216 63.73 c.1.2.3 121846 2omkA 231 64.20 2nxfA 322 65.28 1vl2A 421 69.47 c.26.2.1,d.210.1.1 108708,108709 2hbjA 410 69.62 a.60.8.4,c.55.3.5 136311,136312 1lqaA 346 70.18 c.1.7.1 84674 1aq0A 306 70.42 c.1.8.3 28842 2p8bA 369 72.95 2dri 271 73.10 1kfcA 268 73.12 c.1.2.4 77371 1i0dA 332 74.21 c.1.9.3 61487 1rk6A 496 74.35 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1qgoA 264 75.58 c.92.1.2 35596 1fobA 334 75.97 c.1.8.3 83255 2pn1A 331 76.92 1ujpA 271 77.01 c.1.2.4 99462 1ionA 243 77.01 c.37.1.10 62633 2ioyA 283 77.40 1lucA 355 77.52 c.1.16.1 29547 2rdxA 379 77.70 1xfcA 384 78.72 2qu7A 288 79.37 3c8nA 356 80.08 1m5wA 243 80.12 c.1.24.1 84836 1yeyA 444 80.51 c.1.11.2,d.54.1.1 116664,116665 1l6sA 323 80.70 c.1.10.3 73627 2agkA 260 80.82 1v5xA 203 81.00 c.1.2.4 100377 1zccA 248 81.37 c.1.18.3 124903 1akoA 268 82.10 d.151.1.1 41779 2imrA 420 82.51 1uu1A 335 83.00 c.67.1.1 99993 2plnA 137 83.75 1cl1A 395 85.96 c.67.1.3 34395