# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.34e-15 1m65A 245 1.91e-11 c.6.3.1 84847 2anuA 255 1.30e-09 c.6.3.1 127058 1v77A 212 2.95e-06 c.6.3.2 108402 2hnhA 910 7.58e-06 1j6oA 268 0.8188 c.1.9.12 77088 2qahA 303 0.8656 1i60A 278 1.359 c.1.15.4 71118 1qtwA 285 1.597 c.1.15.1 29392 2ob3A 330 1.834 2gzxA 265 2.127 2ffiA 288 2.461 c.1.9.15 133385 2vc7A 314 2.473 1xwyA 264 3.342 c.1.9.12 122411 2pajA 492 3.408 2gokA 429 3.979 2opjA 327 4.447 1vbjA 281 4.838 1a0dA 440 5.196 c.1.15.3 29533 1vflA 356 5.664 c.1.9.1 120041 1ybqB 390 5.764 2qw5A 335 6.729 1hw6A 278 7.282 c.1.7.1 61296 1gkrA 458 7.496 b.92.1.3,c.1.9.6 70251,70252 1zzmA 259 7.837 c.1.9.12 125911 1zp4A 304 8.405 3cnyA 301 8.542 3brqA 296 8.657 1o0yA 260 8.780 c.1.10.1 80756 2q02A 272 9.040 1yw1A 442 9.159 c.1.16.4 124130 1a0cA 438 9.757 c.1.15.3 29529 3c86A 328 10.46 1g5bA 221 10.84 d.159.1.3 60261 1zgdA 312 11.17 2fb2A 340 11.31 1gkpA 458 11.95 b.92.1.3,c.1.9.6 70231,70232 2i7gA 376 13.13 2b81A 323 13.26 1k77A 260 13.65 c.1.15.5 72096 2icsA 379 13.85 b.92.1.8,c.1.9.14 137241,137242 1f07A 321 14.82 c.1.16.3 59560 1muwA 386 14.92 c.1.15.3 79495 1tvlA 454 15.08 c.1.16.4 107366 1j96A 323 15.52 c.1.7.1 71616 1tv8A 340 16.57 c.1.28.3 107352 1rhcA 330 17.69 c.1.16.3 97468 2qt3A 403 18.11 1yixA 265 18.22 c.1.9.12 123371 1mi3A 322 18.60 c.1.7.1 91274 2g0wA 296 20.26 c.1.15.4 134503 1us0A 316 20.31 c.1.7.1 99850 3be7A 408 21.60 7odcA 424 22.13 b.49.2.3,c.1.6.1 26488,28650 2cygA 312 22.67 c.1.8.3 131025 2g3fA 421 22.86 1q7zA 566 23.11 c.1.21.2,c.1.26.1 96090,96091 2qulA 290 23.96 1gveA 327 24.01 c.1.7.1 70597 2pceA 386 24.42 1yacA 208 25.43 c.33.1.3 31757 3ciwA 348 25.46 1nqkA 381 25.70 c.1.16.4 92050 1frb 315 26.88 2z00A 426 26.88 2i57A 438 27.33 2depA 356 27.59 1zuaX 317 27.74 1wx0A 223 27.94 c.1.10.1 121382 1f6yA 262 28.45 c.1.21.2 29673 1qwkA 317 28.67 c.1.7.1 96482 2nqlA 388 29.02 2qdeA 397 29.97 1s1pA 331 30.02 c.1.7.1 98350 2hejA 323 30.75 1k92A 455 31.58 c.26.2.1,d.210.1.1 68325,68326 2bgsA 344 31.93 2cftA 298 32.23 2q8xA 331 32.93 1ur3M 319 32.99 c.1.7.1 99806 1gqnA 252 33.53 c.1.10.1 90514 2hk0A 309 35.23 2q09A 416 35.54 1ezwA 349 38.00 c.1.16.3 29558 1rvkA 382 38.16 c.1.11.2,d.54.1.1 97928,97929 1v93A 296 39.60 c.1.23.1 100532 1oj7A 408 41.15 e.22.1.2 103971 1v0lA 313 41.19 c.1.8.3 108207 1xbyA 216 41.30 c.1.2.3 121846 1toaA 313 42.67 c.92.2.2 35598 2ps2A 371 43.51 2qv5A 261 44.05 3ce9A 354 44.49 2puzA 419 47.01 1n7kA 234 47.56 c.1.10.1 85374 1vbuA 328 48.53 c.1.8.3 119963 1w8sA 263 49.34 c.1.10.1 120744 3bofA 566 50.93 3b9oA 440 50.93 1vcvA 226 53.33 c.1.10.1 119988 1vl2A 421 53.53 c.26.2.1,d.210.1.1 108708,108709 2nlyA 245 54.57 c.6.2.7 138364 1rk6A 496 54.95 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1k0fA 277 58.01 c.92.2.2 71974 1tjyA 316 59.91 c.93.1.1 107062 2dri 271 60.25 1twiA 434 61.14 b.49.2.3,c.1.6.1 107399,107400 2d5rA 252 62.04 1ionA 243 63.24 c.37.1.10 62633 1kbjA 412 63.61 c.1.4.1 72280 2e7fA 262 64.36 1aq0A 306 64.55 c.1.8.3 28842 1lqaA 346 64.90 c.1.7.1 84674 2omkA 231 65.83 2rdxA 379 65.95 1zccA 248 66.43 c.1.18.3 124903 1kfcA 268 66.83 c.1.2.4 77371 1o2dA 371 68.55 e.22.1.2 86591 1m5wA 243 69.43 c.1.24.1 84836 2qu7A 288 70.08 2ao0A 324 70.10 3ch0A 272 70.65 1uu1A 335 72.87 c.67.1.1 99993 1zjjA 263 73.21 2p8bA 369 73.26 1qgoA 264 73.85 c.92.1.2 35596 1yeyA 444 74.42 c.1.11.2,d.54.1.1 116664,116665 1r85A 379 74.47 c.1.8.3 104839 2fn9A 290 75.79 1fobA 334 76.87 c.1.8.3 83255 1v5xA 203 77.12 c.1.2.4 100377 1ta3B 303 79.33 c.1.8.3 106732 1ujpA 271 79.37 c.1.2.4 99462 2agkA 260 80.12 2egzA 219 80.56 1ynpA 317 83.98 2nxfA 322 85.04 2pmqA 377 86.22 2pljA 419 86.24 1aj2 282 87.86 2ejaA 338 87.98 2plnA 137 88.01 2yxbA 161 88.65 2ioyA 283 89.37 1ra0A 430 89.41 b.92.1.2,c.1.9.5 111756,111757