# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.16e-15 1m65A 245 8.53e-12 c.6.3.1 84847 2anuA 255 6.42e-10 c.6.3.1 127058 1v77A 212 1.87e-06 c.6.3.2 108402 2hnhA 910 5.03e-06 2qahA 303 0.5880 1j6oA 268 0.6889 c.1.9.12 77088 1i60A 278 1.284 c.1.15.4 71118 2ob3A 330 1.479 2ffiA 288 1.895 c.1.9.15 133385 2gzxA 265 1.953 2vc7A 314 2.299 1qtwA 285 2.978 c.1.15.1 29392 1xwyA 264 3.345 c.1.9.12 122411 2pajA 492 4.265 2gokA 429 4.308 1vbjA 281 4.480 2opjA 327 4.542 1ybqB 390 4.751 1a0dA 440 5.904 c.1.15.3 29533 1gkrA 458 6.011 b.92.1.3,c.1.9.6 70251,70252 1yw1A 442 7.048 c.1.16.4 124130 1o0yA 260 7.761 c.1.10.1 80756 1vflA 356 8.928 c.1.9.1 120041 2qw5A 335 9.185 3brqA 296 9.190 1zp4A 304 9.234 1zzmA 259 9.241 c.1.9.12 125911 1hw6A 278 9.305 c.1.7.1 61296 3cnyA 301 9.363 3c86A 328 9.863 1g5bA 221 10.35 d.159.1.3 60261 1zgdA 312 11.61 2fb2A 340 12.13 1f07A 321 12.31 c.1.16.3 59560 1gkpA 458 12.40 b.92.1.3,c.1.9.6 70231,70232 2q02A 272 12.53 1a0cA 438 12.54 c.1.15.3 29529 1rhcA 330 13.19 c.1.16.3 97468 2i7gA 376 13.63 2b81A 323 13.80 2qt3A 403 14.26 2icsA 379 14.38 b.92.1.8,c.1.9.14 137241,137242 1k77A 260 14.96 c.1.15.5 72096 1tvlA 454 15.90 c.1.16.4 107366 1tv8A 340 16.20 c.1.28.3 107352 2g3fA 421 17.51 1j96A 323 17.68 c.1.7.1 71616 2nqlA 388 19.16 1yixA 265 19.93 c.1.9.12 123371 1mi3A 322 20.77 c.1.7.1 91274 1muwA 386 21.42 c.1.15.3 79495 2z00A 426 21.70 2pceA 386 22.57 7odcA 424 23.02 b.49.2.3,c.1.6.1 26488,28650 1us0A 316 23.02 c.1.7.1 99850 2cygA 312 23.24 c.1.8.3 131025 1nqkA 381 23.36 c.1.16.4 92050 1zuaX 317 24.54 1wx0A 223 24.91 c.1.10.1 121382 2bgsA 344 25.35 2q09A 416 26.05 2hejA 323 26.16 2depA 356 27.71 3ce9A 354 27.83 1k92A 455 27.97 c.26.2.1,d.210.1.1 68325,68326 2qdeA 397 28.17 1q7zA 566 28.24 c.1.21.2,c.1.26.1 96090,96091 3be7A 408 29.20 1s1pA 331 30.35 c.1.7.1 98350 2g0wA 296 30.99 c.1.15.4 134503 1qwkA 317 31.55 c.1.7.1 96482 1rvkA 382 31.94 c.1.11.2,d.54.1.1 97928,97929 2cftA 298 33.26 1frb 315 33.44 3ciwA 348 35.19 1ur3M 319 35.20 c.1.7.1 99806 1f6yA 262 35.42 c.1.21.2 29673 1v93A 296 35.74 c.1.23.1 100532 2ps2A 371 35.95 1gveA 327 36.14 c.1.7.1 70597 2q8xA 331 36.25 1yacA 208 37.68 c.33.1.3 31757 1oj7A 408 38.10 e.22.1.2 103971 1ezwA 349 40.17 c.1.16.3 29558 2qulA 290 42.06 1n7kA 234 42.63 c.1.10.1 85374 1v0lA 313 42.81 c.1.8.3 108207 1toaA 313 43.80 c.92.2.2 35598 1gqnA 252 44.21 c.1.10.1 90514 1vcvA 226 45.90 c.1.10.1 119988 2hk0A 309 48.82 1o2dA 371 50.39 e.22.1.2 86591 2qv5A 261 50.56 1vl2A 421 51.73 c.26.2.1,d.210.1.1 108708,108709 1tjyA 316 54.32 c.93.1.1 107062 1kbjA 412 55.03 c.1.4.1 72280 1vbuA 328 55.64 c.1.8.3 119963 2rdxA 379 55.65 2d5rA 252 56.25 2puzA 419 56.93 1kfcA 268 57.30 c.1.2.4 77371 3b9oA 440 58.38 3bofA 566 59.58 1ionA 243 59.68 c.37.1.10 62633 2nlyA 245 60.64 c.6.2.7 138364 1w8sA 263 60.88 c.1.10.1 120744 2nxfA 322 62.81 1k0fA 277 63.11 c.92.2.2 71974 2p8bA 369 63.63 3ct2A 382 65.21 1tzzA 392 65.52 c.1.11.2,d.54.1.1 112896,112897 1xbyA 216 65.85 c.1.2.3 121846 1twiA 434 66.28 b.49.2.3,c.1.6.1 107399,107400 2ao0A 324 67.28 2omkA 231 67.33 1aq0A 306 67.81 c.1.8.3 28842 2i57A 438 67.81 1lucA 355 68.97 c.1.16.1 29547 2p3eA 420 70.12 2agkA 260 73.16 1r85A 379 73.18 c.1.8.3 104839 1fobA 334 75.08 c.1.8.3 83255 1lqaA 346 75.46 c.1.7.1 84674 1v5xA 203 76.35 c.1.2.4 100377 2hbjA 410 76.59 a.60.8.4,c.55.3.5 136311,136312 2dri 271 77.08 1ta3B 303 78.56 c.1.8.3 106732 2pmqA 377 78.85 2ejaA 338 79.53 1zccA 248 79.71 c.1.18.3 124903 1bg4A 302 79.96 c.1.8.3 28806 1ujpA 271 81.22 c.1.2.4 99462 2yx0A 342 81.53 2qu7A 288 81.64 1bf6A 291 82.11 c.1.9.3 29065 2imrA 420 85.84 1xfcA 384 85.98 1rk6A 496 88.01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601