# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 8.18e-13 1m65A 245 9.08e-10 c.6.3.1 84847 2anuA 255 2.28e-08 c.6.3.1 127058 2hnhA 910 3.81e-05 1v77A 212 4.49e-05 c.6.3.2 108402 2gokA 429 1.171 1j6oA 268 1.231 c.1.9.12 77088 2ffiA 288 1.492 c.1.9.15 133385 2gzxA 265 1.611 1qtwA 285 1.986 c.1.15.1 29392 1i60A 278 2.078 c.1.15.4 71118 2qahA 303 2.408 1n7kA 234 3.143 c.1.10.1 85374 2qt3A 403 3.625 1vcvA 226 3.708 c.1.10.1 119988 1f6yA 262 3.944 c.1.21.2 29673 1vflA 356 4.743 c.1.9.1 120041 1zzmA 259 4.852 c.1.9.12 125911 2q09A 416 5.229 2puzA 419 6.715 1vbjA 281 7.146 1o0yA 260 7.344 c.1.10.1 80756 1gkrA 458 7.344 b.92.1.3,c.1.9.6 70251,70252 1hw6A 278 7.694 c.1.7.1 61296 1us0A 316 8.146 c.1.7.1 99850 2qw5A 335 8.517 1frb 315 8.862 1zgdA 312 9.132 2g3fA 421 9.403 2q02A 272 9.503 2bgsA 344 9.616 1yixA 265 9.753 c.1.9.12 123371 1ur3M 319 9.810 c.1.7.1 99806 3cjpA 272 10.76 2g0wA 296 11.01 c.1.15.4 134503 2depA 356 11.63 3cnyA 301 11.97 1q7zA 566 12.04 c.1.21.2,c.1.26.1 96090,96091 1ur4A 399 14.07 c.1.8.3 113402 2ob3A 330 14.73 1aq0A 306 15.26 c.1.8.3 28842 1a0dA 440 15.64 c.1.15.3 29533 2fb2A 340 15.88 2ogyA 262 16.35 2cygA 312 16.41 c.1.8.3 131025 2i57A 438 16.61 3brqA 296 17.28 1ynpA 317 17.50 2q8xA 331 18.33 2pajA 492 18.38 1qgoA 264 18.40 c.92.1.2 35596 2b81A 323 19.69 1gveA 327 19.76 c.1.7.1 70597 1gkpA 458 19.79 b.92.1.3,c.1.9.6 70231,70232 1rk6A 496 20.06 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1muwA 386 20.29 c.1.15.3 79495 2ei9A 240 20.92 1ybqB 390 22.32 1xwyA 264 22.33 c.1.9.12 122411 2vc7A 314 22.80 2nxfA 322 23.32 1zuaX 317 24.21 2ps2A 371 24.47 1i0dA 332 24.50 c.1.9.3 61487 2e7fA 262 24.95 2icsA 379 25.07 b.92.1.8,c.1.9.14 137241,137242 2nqlA 388 25.44 1zp4A 304 26.70 2opjA 327 26.71 2ejaA 338 26.91 1j96A 323 28.19 c.1.7.1 71616 2yx0A 342 28.44 1rvkA 382 29.10 c.1.11.2,d.54.1.1 97928,97929 1v0lA 313 29.14 c.1.8.3 108207 1bg4A 302 29.38 c.1.8.3 28806 2ao0A 324 31.88 3be7A 408 32.66 3ciwA 348 33.38 1mi3A 322 34.67 c.1.7.1 91274 3canA 182 34.77 2hejA 323 35.12 1ub3A 220 35.22 c.1.10.1 88395 1w8sA 263 36.90 c.1.10.1 120744 3bofA 566 37.33 1kbjA 412 37.65 c.1.4.1 72280 3c86A 328 37.73 1k77A 260 37.93 c.1.15.5 72096 3buvA 326 38.05 1lqaA 346 38.13 c.1.7.1 84674 1ra0A 430 38.74 b.92.1.2,c.1.9.5 111756,111757 1twiA 434 39.14 b.49.2.3,c.1.6.1 107399,107400 1gqnA 252 40.43 c.1.10.1 90514 7odcA 424 40.77 b.49.2.3,c.1.6.1 26488,28650 2hfsA 332 41.58 2o55A 258 42.64 1uozA 315 43.24 c.6.1.1 113354 2pceA 386 43.64 1kkhA 317 44.26 d.14.1.5,d.58.26.3 72645,72646 2hk0A 309 44.77 1r85A 379 45.05 c.1.8.3 104839 2r6oA 294 45.69 2p8bA 369 45.86 2podA 410 46.04 2qulA 290 46.27 1yw1A 442 47.14 c.1.16.4 124130 1qwkA 317 48.68 c.1.7.1 96482 1qo2A 241 48.80 c.1.2.1 28533 1sflA 238 48.82 c.1.10.1 112077 1mzhA 225 48.90 c.1.10.1 79698 1a0cA 438 49.34 c.1.15.3 29529 2qdeA 397 49.38 2hx1A 284 51.11 2gl5A 410 51.11 c.1.11.2,d.54.1.1 135336,135337 1vc4A 254 51.58 c.1.2.4 100557 2z00A 426 53.81 2yr1A 257 56.19 2agkA 260 56.51 1vbuA 328 57.74 c.1.8.3 119963 1s1pA 331 57.96 c.1.7.1 98350 1tjyA 316 60.25 c.93.1.1 107062 1xfcA 384 61.14 2fn9A 290 61.81 2csuA 457 62.12 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2d1zA 436 62.61 1ta3B 303 63.84 c.1.8.3 106732 2h1vA 310 65.20 1tv8A 340 65.76 c.1.28.3 107352 2ioyA 283 65.81 2ox4A 403 66.42 1wx0A 223 66.58 c.1.10.1 121382 2zadA 345 67.28 1xrtA 467 67.38 b.92.1.3,c.1.9.6 122258,122259 2dskA 311 67.39 1oj7A 408 68.65 e.22.1.2 103971 2pljA 419 69.45 2i7gA 376 69.69 1cl1A 395 70.41 c.67.1.3 34395 1nq6A 302 70.59 c.1.8.3 92046 2egzA 219 71.96 1m5wA 243 72.35 c.1.24.1 84836 1rrmA 386 72.68 e.22.1.2 105081 3cz8A 319 73.21 1o2dA 371 77.63 e.22.1.2 86591 3ct2A 382 77.80 1nqkA 381 77.99 c.1.16.4 92050 2amxA 376 78.02 c.1.9.1 127024 3co4A 312 78.21 1ezwA 349 78.24 c.1.16.3 29558 1nrwA 288 78.28 c.108.1.10 86128 2oz8A 389 78.69 3c8nA 356 84.63 1g0cA 364 85.10 c.1.8.3 60165 2c4nA 250 85.42 c.108.1.14 129837 2dqwA 294 86.34 1pz1A 333 86.96 c.1.7.1 95390 2hqbA 296 87.60 1xw8A 252 87.62 c.6.2.5 116111 1vr6A 350 89.31 c.1.10.4 120439 1p1xA 260 89.92 c.1.10.1 104060